PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold07767-augustus-gene-0.5-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | AP2 | ||||||||
Protein Properties | Length: 516aa MW: 57707.5 Da PI: 7.4346 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.8 | 1.3e-13 | 162 | 223 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+ + + k+++lg f+ta Aa+a+++a+ k++g maker-scaffold07767-augustus-gene-0.5-mRNA-1 162 SQYRGVTFYRRTGRWESHIWLvFFFfFFffyvdCGKQVYLGGFDTAHAAARAYDRAAIKFRG 223 78*******************66556225665444************************997 PP | |||||||
2 | AP2 | 43.8 | 6.5e-14 | 266 | 316 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g maker-scaffold07767-augustus-gene-0.5-mRNA-1 266 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 316 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.31E-12 | 162 | 232 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-7 | 162 | 223 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-25 | 163 | 237 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.937 | 163 | 231 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-14 | 163 | 231 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-17 | 266 | 326 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-9 | 266 | 316 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.77E-25 | 266 | 326 | No hit | No description |
SMART | SM00380 | 4.2E-31 | 267 | 330 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.461 | 267 | 324 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-16 | 267 | 324 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-6 | 268 | 279 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-6 | 306 | 326 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MWDLNDSPDQ RRDDESEGCS SQKTSFDGDD DKGKRVGSMS NSSSSAVVIE DGSDDDQDCD 60 PQKFKRRSSP NKLFGFSFND SSEPQPVTHQ FFPVDESEMG ATSGGALVGS MESTGGASAA 120 TFPRAHWVGV KFCQSDSLSP GKSVEVSQPM KKSRRGPRSR SSQYRGVTFY RRTGRWESHI 180 WLVFFFFFFF FYVDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF RIEDYEEDLK 240 QMNNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE 300 IEAARAYDKA AIKCNGKEAV TNFDPSIYEN ELNNSTGNFT LMSNGNDGYN AAMGQNSMLM 360 PLEADWRNQG FRPNKEASRG ESDGQGHGHG HGHGRDGYSE TETMQLLSRT HLQSASSNSN 420 EMQRRVYFRR AGETQMQHNF TPHISPPNYQ VQYPSSSSNG GRIGGDLSLT INDQQWQSAP 480 PQLFAAAAAS SGFSPQIKSS QHWLQKNGFH TLMRPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN247408 | 1e-153 | JN247408.1 Betula platyphylla APETALA2 (AP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023883493.1 | 0.0 | floral homeotic protein APETALA 2-like | ||||
Swissprot | P47927 | 1e-129 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A2N9FEV8 | 0.0 | A0A2N9FEV8_FAGSY; Uncharacterized protein | ||||
STRING | VIT_07s0031g00220.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3784 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-120 | AP2 family protein |