PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07035-snap-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 264aa    MW: 29514.4 Da    PI: 10.751
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07035-snap-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026215237123
                                                EEETTTTEEESSHHHHHHHHHHT CS
                                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                ++C++Cg  F +   L  H+r+H
  maker-scaffold07035-snap-gene-0.14-mRNA-1 215 HECSICGLEFATGQALGGHMRRH 237
                                                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.8E-93863IPR007087Zinc finger, C2H2
SuperFamilySSF576672.29E-638109No hitNo description
SMARTSM003550.673961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SMARTSM003550.2187109IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.14187114IPR007087Zinc finger, C2H2
PfamPF139126.7E-987111IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
PfamPF139126.4E-12165191IPR007087Zinc finger, C2H2
SuperFamilySSF576675.45E-7165237No hitNo description
SMARTSM003550.3166189IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764166194IPR007087Zinc finger, C2H2
PROSITE patternPS000280168189IPR007087Zinc finger, C2H2
SMARTSM003550.027215237IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349215242IPR007087Zinc finger, C2H2
PfamPF139124.4E-11215239IPR007087Zinc finger, C2H2
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MKRMREDGGI GSLDMANCLM LLSHSLKAKP KKASRADVFE CKTCNRQCPS FQALGGHRAS  60
HKRPKLMGEE LKESTKTQNL GNKHKMHECS ICGLEFAMGR ALGGHMRRHR AMMDGVFSSA  120
TIEKKVPVLK RSNSKRVMCL DLNLTPLEND LNFETKPRKA SRADVFECKT CNRQFPSFQA  180
LGGHRSASHK RPKLMGEEMK EGTKTQNLGN KPKMHECSIC GLEFATGQAL GGHMRRHRAM  240
MDGAFSSATI EKKVPVLKRS NSKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921530.11e-109zinc finger protein ZAT11-like
SwissprotQ9SLD43e-38ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A371HZD82e-87A0A371HZD8_MUCPR; Zinc finger protein ZAT11 (Fragment)
STRINGGorai.006G176000.16e-62(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-40C2H2 family protein