PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold06912-snap-gene-0.15-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | B3 | ||||||||
Protein Properties | Length: 418aa MW: 48161.7 Da PI: 9.028 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.7 | 1.5e-16 | 6 | 96 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 f +l+ s + +s++l++p kf+ + + s +tl ++g +W+v l +k +++ ++ +GW++Fv+ maker-scaffold06912-snap-gene-0.15-mRNA-1 6 FHKLILSTTIQSKQLRIPEKFVMKVRDD--LSPVVTLSVPDGHVWQVGL--KKVDSSAWFHNGWQDFVEH 71 5567788999999*********999655..5668***************..999999************* PP HT--TT-EEEEEE-SSSEE..EEEEE- CS B3 72 ngLkegDfvvFkldgrsefelvvkvfr 98 +++g f+vF+++g+s+f +v++f+ maker-scaffold06912-snap-gene-0.15-mRNA-1 72 YSIRVGYFLVFRYEGNSSF--FVHIFN 96 ****************999..999986 PP | |||||||
2 | B3 | 56.3 | 5.7e-18 | 303 | 384 | 4 | 89 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70 vl ps+ + ++++lp fae++ +g++ ++l++++gr+W v++ yr+++ l++GW eF maker-scaffold06912-snap-gene-0.15-mRNA-1 303 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQTSEGRQWPVRCLYRGGR--AKLSQGWYEFSL 365 78899******************866743...5***************665555..66********** PP HHT--TT-EEEEEE-SSSE CS B3 71 angLkegDfvvFkldgrse 89 +n+L egD++vF+l + +e maker-scaffold06912-snap-gene-0.15-mRNA-1 366 ENNLGEGDVCVFELLKMRE 384 *************876444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-22 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-22 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.62E-19 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 13.902 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.6E-16 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-13 | 7 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-23 | 292 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.05E-23 | 293 | 392 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.24E-20 | 298 | 393 | No hit | No description |
PROSITE profile | PS50863 | 13.451 | 300 | 393 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.7E-17 | 300 | 395 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-16 | 303 | 388 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MPRPYFHKLI LSTTIQSKQL RIPEKFVMKV RDDLSPVVTL SVPDGHVWQV GLKKVDSSAW 60 FHNGWQDFVE HYSIRVGYFL VFRYEGNSSF FVHIFNLANS EVNYQNNTPG GPQGISYASH 120 YRVFEEMEDD DFTEILSSTP TTESLKNKLF GERGDLLTPN KSYNPPSLQN LFNGSKLKNC 180 LNWAGDGNMH PSKGVDKSPS EIHHTREIGV QFNATELKKS LDEVKLQSAD QEIQKLKKTM 240 RKKRKNDPNE QESSARHEEE IDMRFRFYES ASARKRTVTA EERERAINAA KAFEPTNPFC 300 RVVLRPSYLY RGCIMYLPSC FAEKNLSGVS GFIKLQTSEG RQWPVRCLYR GGRAKLSQGW 360 YEFSLENNLG EGDVCVFELL KMREIVLKVT TYRVLDDNGL VVNQPLMQHV NHLKLIRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-73 | 266 | 394 | 15 | 142 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-73 | 266 | 394 | 15 | 142 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 244 | LKKTMRKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023874360.1 | 0.0 | B3 domain-containing transcription factor VRN1-like | ||||
Swissprot | Q8L3W1 | 1e-138 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A2I4DLF3 | 0.0 | A0A2I4DLF3_JUGRE; B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
STRING | XP_010096266.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-137 | B3 family protein |
Publications ? help Back to Top | |||
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