PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold06762-augustus-gene-0.9-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 494aa MW: 53243 Da PI: 6.9618

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold06762-augustus-gene-0.9-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	9.9e-40	131	191	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s maker-scaffold06762-augustus-gene-0.9-mRNA-1 131 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 191 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-31	128	188	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-32	133	189	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	135	189	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	137	173	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MSEAKDPAIK LFGKTIPVPE VQANGSGECS GAPSACSGPL VDDNIDQDRA SSSSSSAEKD 60 TMGEKPTANK KEDGGLPVSS EESTNPDGAS GISENPKTPS VEKESATLKA SKTEEEHSES 120 SNSQEKTLKK PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV 180 GAGRRKNKNS ASHYRHITVS EALQNARADL PNGVHHPSLK SNSTVLTFGS DTPLCESMAS 240 VLNLADKTMR NCTPNGIHKP EELRIPVPYG GGENGDDHSN GASVASSKPK DEPGKIGSQE 300 QVMRNCQGFT PQIPYFPGAP WPYPWHSAQW SSPVPPPAFC SPGFPMPFYP AAAYWGCTVP 360 GTWNIPWLPQ PTSPNHTAPS SGPNSPTLGK HSRDENILKS SNSGDEEPQK ENNAERCLWI 420 PKTLRIDDPG EAARSSIWAT LGIKNDKADT ISGGGLFKAF QSKTDEKKHV AETSPVLQAN 480 PAALSRSLNF HESS

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MSEAKDPAIK LFGKTIPVPE VQANGSGECS GAPSACSGPL VDDNIDQDRA SSSSSSAEKD  60
TMGEKPTANK KEDGGLPVSS EESTNPDGAS GISENPKTPS VEKESATLKA SKTEEEHSES  120
SNSQEKTLKK PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV  180
GAGRRKNKNS ASHYRHITVS EALQNARADL PNGVHHPSLK SNSTVLTFGS DTPLCESMAS  240
VLNLADKTMR NCTPNGIHKP EELRIPVPYG GGENGDDHSN GASVASSKPK DEPGKIGSQE  300
QVMRNCQGFT PQIPYFPGAP WPYPWHSAQW SSPVPPPAFC SPGFPMPFYP AAAYWGCTVP  360
GTWNIPWLPQ PTSPNHTAPS SGPNSPTLGK HSRDENILKS SNSGDEEPQK ENNAERCLWI  420
PKTLRIDDPG EAARSSIWAT LGIKNDKADT ISGGGLFKAF QSKTDEKKHV AETSPVLQAN  480
PAALSRSLNF HESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023903997.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A2I4E3P6	0.0	A0A2I4E3P6_JUGRE; cyclic dof factor 2-like
TrEMBL	A0A2I4EKQ3	0.0	A0A2I4EKQ3_JUGRE; cyclic dof factor 2-like
STRING	VIT_14s0108g00980.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-118	cycling DOF factor 2