PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06695-snap-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TALE
Protein Properties Length: 683aa    MW: 75087.2 Da    PI: 6.0483
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06695-snap-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-094264631954
                                                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                                Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  maker-scaffold06695-snap-gene-0.15-mRNA-1 426 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 463
                                                664459******************************88 PP
2BELL127.25.8e-41288359172
                                       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdai 68 
                                                e+q+lq+k +kLls+ +eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai
  maker-scaffold06695-snap-gene-0.15-mRNA-1 288 EKQDLQNKLTKLLSMSDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAI 355
                                                6899**************************************************************** PP

                                       BELL  69 aeqi 72 
                                                ++qi
  maker-scaffold06695-snap-gene-0.15-mRNA-1 356 TGQI 359
                                                ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-61207357IPR006563POX domain
PfamPF075261.5E-49213356IPR006563POX domain
PROSITE profilePS5007112.163404467IPR001356Homeobox domain
SMARTSM003891.0E-9407471IPR001356Homeobox domain
CDDcd000864.49E-13407468No hitNo description
SuperFamilySSF466892.31E-17408475IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-29410473IPR009057Homeodomain-like
PfamPF059204.6E-18424463IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MATFYTSSNN QRDSAPMLYL REHLPSSYAE APVIPGNMMM YMNSGPYSDA LAGSSQQQNN  60
CMEISSLGAS NSTPQQQEIL SNLGGPRIAE HDFNAWREAR NEMLVTHPMG GATSILHSGQ  120
NLQGQGLSLS LSTQMPSGIQ MSSIPYRNPN PGFASFLSPN SSISGDSGDR NGSSRDEQLR  180
NAEYLPPGFP GGNQDLNKGD SSPYGMPSIV RNVPNSKYLK VAQQLLDEVV NVRKALKEAD  240
MKNESTYEKN SKEGDGGSKN ENALPPSGVS SNPQESAGNS PCELSNAEKQ DLQNKLTKLL  300
SMSDEVDRRY KQYYHQMQIV VSSFDVIAGC GAAKPYTALA LQTISRHFRC LRDAITGQIR  360
ATRKSLGEQD TSGSSRGVGI TRLRYVDQQL RQQRALQQLG MMQQHAWRPQ RGLPESSVSI  420
LRAWLFEHFL HPYPKDSDKI MLARQTGLTR SQVSNWFINA RVRLWKPMVE EMYKEETGDM  480
EMDSNSSSEN AVKATKGDNR TSEERGEDLQ QSASSTATER CSTGQLTDSK PNHVPDVEMA  540
GSSVINFHNG SRGEAENEYG LVKRREEQRP NVDDCSLFPD AMMQSDAASE RFMAAAAAYH  600
MSELGRFGSG SGVSLTLGLQ HCEDGSLPMS SGNHHSFMSM RGDEIYSAAA SSVGPETADY  660
ECMNPGNQQH RFSSSHLLHD FVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16413470158Homeobox protein Meis1
4xrs_B2e-16413470158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920729.10.0BEL1-like homeodomain protein 6
RefseqXP_023920730.10.0BEL1-like homeodomain protein 6
TrEMBLA0A2N9IZ560.0A0A2N9IZ56_FAGSY; Uncharacterized protein
STRINGXP_006487349.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-126BEL1-like homeodomain 6