PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06251-augustus-gene-0.5-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 833aa    MW: 91211.1 Da    PI: 6.1763
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06251-augustus-gene-0.5-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-18563357
                                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                                  k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  maker-scaffold06251-augustus-gene-0.5-mRNA-2  5 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                                                  6789*****************************************************97 PP
2START177.38.9e-561543612204
                                                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHC CS
                                         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveell 66 
                                                   +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l
  maker-scaffold06251-augustus-gene-0.5-mRNA-2 154 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEIL 217
                                                   68999*****************************************************.888888 PP

                                                   CCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEE CS
                                         START  67 ddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdv 128
                                                   + ++ W ++++++++l +i +g  g+++l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++
  maker-scaffold06251-augustus-gene-0.5-mRNA-2 218 KERLSWFRDCRSIDVLSAIPTGngGTIELIYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICER 282
                                                   8888************************************************************* PP

                                                   EEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHH CS
                                         START 129 Svdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgla 190
                                                   S++s +  p    + s+vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s+ +
  maker-scaffold06251-augustus-gene-0.5-mRNA-2 283 SLTSSTGGPAgppTTSFVRAEVLPSGYLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKI 347
                                                   ****999998888**************************************************** PP

                                                   HHHHHHHHHTXXXX CS
                                         START 191 egaktwvatlqrqc 204
                                                    ++k++va+l++ +
  maker-scaffold06251-augustus-gene-0.5-mRNA-2 348 LAQKMTVAALRHIR 361
                                                   **********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.677164IPR001356Homeobox domain
SMARTSM003897.1E-15268IPR001356Homeobox domain
CDDcd000863.96E-16565No hitNo description
SuperFamilySSF466892.91E-16567IPR009057Homeodomain-like
PfamPF000465.5E-16563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-18763IPR009057Homeodomain-like
CDDcd146861.75E-65796No hitNo description
PROSITE profilePS5084826.098144372IPR002913START domain
CDDcd088751.62E-68148364No hitNo description
Gene3DG3DSA:3.30.530.202.7E-23152358IPR023393START-like domain
SMARTSM002348.9E-53153363IPR002913START domain
PfamPF018522.0E-53154361IPR002913START domain
SuperFamilySSF559612.06E-37154365No hitNo description
SuperFamilySSF559612.47E-6401486No hitNo description
SuperFamilySSF559612.47E-6514588No hitNo description
PfamPF086707.4E-50688832IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSHLVY ENGYMRQQLQ SASGTTTDNS  120
CESVVMSGQQ QQQQNPTPQH PQRDANNPAG LLAIAEETLA EFLSKATGTA VDWVQMIGMK  180
PGPDSIGIVA VSRNCSGVAA RACGLVSLEP TKVAEILKER LSWFRDCRSI DVLSAIPTGN  240
GGTIELIYMQ TYAPTTLAAA RDFWTLRYTT SLEDGSLVIC ERSLTSSTGG PAGPPTTSFV  300
RAEVLPSGYL IRPCEGGGSI IHIVDHVDLD AWSVPEVLRP LYESSKILAQ KMTVAALRHI  360
RQIAQESSGE IQYGGGRQPA VLRTFSQRLC RGFNDAVNGF ADDGWSLMGS DGVEDVTIMI  420
NSSPNKFLGS QYSTSMFSTF GGGVLCAKAS MLLQNVPPAL LVRFLREHRS EWADYGVDAY  480
SAACLKASPY AVPCARPGGF PGSQVILPLA HTVEHEEFLE VVRLEGHAFS PEDVALARDM  540
YLLQLCSGVD ENAVGACAQL VFAPIDESFA DDAPLLPSGF RVIPLDPKPD GPAATRTLDL  600
ASTLEVGAGG ARPAGEADLN GYNLRSVLTI AFQFTFESHL RDNVAAMARQ YVRSVVGSVQ  660
RVAMAISPSR LSSHMGPKPL PGSPEALTLA RWICRSYRIH TGGELFRVES QASDAILKQL  720
WLHSDAILCC SVKTNASPVF TFANQAGLDM LETTLVALQD IMLDKILDEA GRKILCSEFS  780
KIMQQGFAYL PAGICLSSMG RPVSYEQAIA WKVLNDDDSN HCLAFMFLNW SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4515600.0KJ451560.1 Betula luminifera class III HD-Zip protein HDZ1 (HDZ1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919941.10.0homeobox-leucine zipper protein ATHB-14-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2N9J8X20.0A0A2N9J8X2_FAGSY; Uncharacterized protein
STRINGVIT_10s0003g04670.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]