PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06251-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92142.3 Da    PI: 6.1763
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06251-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-18563357
                                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                                  k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  maker-scaffold06251-augustus-gene-0.5-mRNA-1  5 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                                                  6789*****************************************************97 PP
2START168.93.4e-531543692204
                                                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHH...... CS
                                         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlal...... 60 
                                                   +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  ++++      
  maker-scaffold06251-augustus-gene-0.5-mRNA-1 154 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKvfflpt 218
                                                   68999***********************************************9988644222222 PP

                                                   .HHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS CS
                                         START  61 .lveellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgag 121
                                                    lv+e+l+ ++ W ++++++++l +i +g  g+++l++++++a+++l++ Rdf+++Ry+ +l++g
  maker-scaffold06251-augustus-gene-0.5-mRNA-1 219 lLVAEILKERLSWFRDCRSIDVLSAIPTGngGTIELIYMQTYAPTTLAAaRDFWTLRYTTSLEDG 283
                                                   289************************************************************** PP

                                                   -EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
                                         START 122 dwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                                                   ++vi+++S++s +  p    + s+vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+
  maker-scaffold06251-augustus-gene-0.5-mRNA-1 284 SLVICERSLTSSTGGPAgppTTSFVRAEVLPSGYLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRP 348
                                                   ***********999998888********************************************* PP

                                                   HHHHHHHHHHHHHHHHTXXXX CS
                                         START 184 lvksglaegaktwvatlqrqc 204
                                                   l++s+ + ++k++va+l++ +
  maker-scaffold06251-augustus-gene-0.5-mRNA-1 349 LYESSKILAQKMTVAALRHIR 369
                                                   *****************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.677164IPR001356Homeobox domain
SMARTSM003897.1E-15268IPR001356Homeobox domain
CDDcd000864.02E-16565No hitNo description
SuperFamilySSF466892.95E-16567IPR009057Homeodomain-like
PfamPF000465.6E-16563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-18763IPR009057Homeodomain-like
CDDcd146861.78E-65796No hitNo description
PROSITE profilePS5084826144380IPR002913START domain
CDDcd088757.05E-66148372No hitNo description
Gene3DG3DSA:3.30.530.201.2E-21152366IPR023393START-like domain
SMARTSM002342.3E-49153371IPR002913START domain
SuperFamilySSF559619.48E-36154373No hitNo description
PfamPF018528.6E-51154369IPR002913START domain
SuperFamilySSF559612.47E-6409494No hitNo description
SuperFamilySSF559612.47E-6522596No hitNo description
PfamPF086707.5E-50696840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSHLVY ENGYMRQQLQ SASGTTTDNS  120
CESVVMSGQQ QQQQNPTPQH PQRDANNPAG LLAIAEETLA EFLSKATGTA VDWVQMIGMK  180
PGPDSIGIVA VSRNCSGVAA RACGLVSLEP TKVFFLPTLL VAEILKERLS WFRDCRSIDV  240
LSAIPTGNGG TIELIYMQTY APTTLAAARD FWTLRYTTSL EDGSLVICER SLTSSTGGPA  300
GPPTTSFVRA EVLPSGYLIR PCEGGGSIIH IVDHVDLDAW SVPEVLRPLY ESSKILAQKM  360
TVAALRHIRQ IAQESSGEIQ YGGGRQPAVL RTFSQRLCRG FNDAVNGFAD DGWSLMGSDG  420
VEDVTIMINS SPNKFLGSQY STSMFSTFGG GVLCAKASML LQNVPPALLV RFLREHRSEW  480
ADYGVDAYSA ACLKASPYAV PCARPGGFPG SQVILPLAHT VEHEEFLEVV RLEGHAFSPE  540
DVALARDMYL LQLCSGVDEN AVGACAQLVF APIDESFADD APLLPSGFRV IPLDPKPDGP  600
AATRTLDLAS TLEVGAGGAR PAGEADLNGY NLRSVLTIAF QFTFESHLRD NVAAMARQYV  660
RSVVGSVQRV AMAISPSRLS SHMGPKPLPG SPEALTLARW ICRSYRIHTG GELFRVESQA  720
SDAILKQLWL HSDAILCCSV KTNASPVFTF ANQAGLDMLE TTLVALQDIM LDKILDEAGR  780
KILCSEFSKI MQQGFAYLPA GICLSSMGRP VSYEQAIAWK VLNDDDSNHC LAFMFLNWSF  840
V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4515600.0KJ451560.1 Betula luminifera class III HD-Zip protein HDZ1 (HDZ1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919941.10.0homeobox-leucine zipper protein ATHB-14-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2N9J8X20.0A0A2N9J8X2_FAGSY; Uncharacterized protein
STRINGVIT_10s0003g04670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]