PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold06242-snap-gene-0.8-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 199aa MW: 23104.3 Da PI: 7.8572 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 105.1 | 5.9e-33 | 20 | 119 | 2 | 101 |
HHHHHHHHHC.........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS HSF_DNA-bind 2 Flkklyeile.........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 Fl+k+y++l d++ ++++sw+++g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+Yg maker-scaffold06242-snap-gene-0.8-mRNA-1 20 FLSKTYDLLGgvaddedddDDDKRNIVSWNAEGTGFVVWSPAEFSEFMLPKYFKHNNFSSFIRQLNTYG 88 99*******9999998888889*********************************************** PP EEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 62 FkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 Fkk+++++ weFkh++F+kg ++ll +i rkk maker-scaffold06242-snap-gene-0.8-mRNA-1 89 FKKTSSKR---------WEFKHEKFQKGCRNLLVEITRKK 119 ****9998.........*********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.7E-34 | 12 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.6E-40 | 16 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.94E-26 | 17 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.2E-29 | 20 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-9 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-9 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MELNLLGTSQ SPRARCPAPF LSKTYDLLGG VADDEDDDDD DKRNIVSWNA EGTGFVVWSP 60 AEFSEFMLPK YFKHNNFSSF IRQLNTYGFK KTSSKRWEFK HEKFQKGCRN LLVEITRKKC 120 GPSIFPAYLK ASEENTMSMT AMEENNNHQL LLEEENKNLK REKLELQTQI AQFKALEIKL 180 LDYLAQCMGN NQNKVRRLC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-15 | 6 | 118 | 16 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-15 | 6 | 118 | 16 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-15 | 6 | 118 | 16 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023877712.1 | 1e-128 | heat stress transcription factor B-2a-like | ||||
TrEMBL | A0A2N9I566 | 1e-104 | A0A2N9I566_FAGSY; Uncharacterized protein | ||||
STRING | GLYMA01G34490.1 | 2e-93 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36990.1 | 2e-36 | heat shock factor 4 |