PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold06155-augustus-gene-0.11-mRNA-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 361aa MW: 40781.9 Da PI: 6.5049 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 289 | 323 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ maker-scaffold06155-augustus-gene-0.11-mRNA-2 289 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 323 569*****************************885 PP | |||||||
2 | ELK | 41.1 | 3.7e-14 | 243 | 264 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ maker-scaffold06155-augustus-gene-0.11-mRNA-2 243 ELKGQLLRKYSGYLGSLKQEFM 264 9********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.0E-18 | 106 | 150 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.5E-20 | 108 | 146 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.1E-26 | 156 | 207 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.6E-21 | 159 | 205 | IPR005541 | KNOX2 |
SMART | SM01188 | 2.8E-8 | 243 | 264 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.174 | 243 | 263 | IPR005539 | ELK domain |
Pfam | PF03789 | 6.0E-11 | 243 | 264 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.989 | 263 | 326 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.4E-13 | 265 | 330 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.92E-19 | 265 | 340 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-28 | 268 | 328 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.40E-12 | 275 | 327 | No hit | No description |
Pfam | PF05920 | 6.5E-17 | 283 | 322 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 301 | 324 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 361 aa Download sequence Send to blast |
MESGSNGTSC MMAFGENSSN GLCPMMMMMP LMTSHHSHHH PNADTNSLFL PLPPNNNHDH 60 QNQNRNTPTP TTNINNSSSF ILDDHNANSN TGLFFMESNN NEGSSSSVKA KIMAHPHYHR 120 LLAAYANCQK VGAPPEVVAR LEQACSTAAN MGHSASTGCI GEDPALDQFM EAYCEMLTKY 180 EQELSKPFKE AMLFLQRIEC QFKALAVSSS DSACVEAVDR NVSSEEEVDV NNNFIDPQAE 240 DRELKGQLLR KYSGYLGSLK QEFMKKRKKG KLPKEARQQL LDWWSRHYKW PYPSESQKLA 300 LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVMDATHP HYYMDNVLGN PFPMDISPAL 360 L |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 258 | 267 | LKQEFMKKRK |
2 | 264 | 268 | KKRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00675 | ChIP-seq | Transfer from GRMZM2G017087 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023881608.1 | 0.0 | homeobox protein SBH1-like | ||||
Swissprot | P46608 | 1e-165 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A2N9H8S9 | 0.0 | A0A2N9H8S9_FAGSY; Uncharacterized protein | ||||
STRING | XP_002518420.1 | 0.0 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-142 | KNOX/ELK homeobox transcription factor |
Publications ? help Back to Top | |||
---|---|---|---|
|