PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06057-snap-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bZIP
Protein Properties Length: 468aa    MW: 51425.5 Da    PI: 7.8767
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06057-snap-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.5e-10183223545
                                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                                k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  maker-scaffold06057-snap-gene-0.13-mRNA-1 183 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 223
                                                788*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-7172226No hitNo description
SMARTSM003382.7E-9179242IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415181225IPR004827Basic-leucine zipper domain
PfamPF001702.8E-7183223IPR004827Basic-leucine zipper domain
CDDcd147083.84E-21183235No hitNo description
SuperFamilySSF579597.5E-7183226No hitNo description
PROSITE patternPS000360186201IPR004827Basic-leucine zipper domain
PfamPF141441.7E-31265340IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGSRTVKIGT EDANKVVTGM PSFVPAIPTS NSLGTEGNAI GSSRISEFGT FEQSLGFRIE  60
DAVDLSRNPL YNQMKSSSQT LGTEVQFATL NKSLASSDIN LSAAIVGSQT LSLQKESQSN  120
LVSTSGGHRE NWGESTMAEA SPRTDTSTDD TDDKNQRHER GQLAVVAASD SSDKSKEKSG  180
DQKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRLKLTQLE QELQRARQQG IFISSSGDQS  240
HSMSGNGALA FDVEYARWLE EHNRHISELR AAVNSHAGDT ELRTIVDNVT AHFDDIFRLK  300
GIAAKADVFH ILSGMWKTPA ERCFMWIGGF RSSELLKLLV NQLEPLTEQQ LVGIYNLQQS  360
SQQAEDALSQ GMEALQQSLA ETLANGSPGP SGSSGNVANY MGQMAMAMGK LGTLEGFLRQ  420
ADNLRQQTLQ QMHRILTTRQ SARALLAIHD YFSRLRALSS LWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924781.10.0transcription factor TGA2.3-like isoform X1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A2P5BIP10.0A0A2P5BIP1_TREOI; Basic-leucine zipper transcription factor
STRINGEOY086450.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-137bZIP family protein