PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold05973-snap-gene-0.15-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | Whirly | ||||||||
Protein Properties | Length: 242aa MW: 26718.9 Da PI: 10.1345 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 189 | 7.9e-59 | 63 | 199 | 1 | 137 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdl 68 svyk+kaal+v +v+ptf++ldsg+l+++r+G +++++ +a++erkyd ek+q fals+tev+++++l maker-scaffold05973-snap-gene-0.15-mRNA-1 63 SVYKGKAALSVTPVLPTFTKLDSGTLVVDRRGVMMMKFLPAIGERKYDNEKRQMFALSPTEVGSMISL 130 79****************************************************************** PP Whirly 69 askesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrs 136 ++k+sceffhdp++ +sn+G+vrk+l ++ ++dG+G++++l+v n+++k++e f+vPv+ aefav+++ maker-scaffold05973-snap-gene-0.15-mRNA-1 131 GPKDSCEFFHDPSMLSSNAGQVRKSLTIKAHADGTGYLISLNVVNNILKTKEFFTVPVTTAEFAVMKT 198 *******************************************************************9 PP Whirly 137 l 137 + maker-scaffold05973-snap-gene-0.15-mRNA-1 199 A 199 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.5E-71 | 52 | 220 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.1E-64 | 56 | 222 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.0E-56 | 64 | 198 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MMKLARLLAS RSQLSEKLLY GKAGDVKDAS RLYAFTSQAG ISNARENSAA KGYIADRIFA 60 PYSVYKGKAA LSVTPVLPTF TKLDSGTLVV DRRGVMMMKF LPAIGERKYD NEKRQMFALS 120 PTEVGSMISL GPKDSCEFFH DPSMLSSNAG QVRKSLTIKA HADGTGYLIS LNVVNNILKT 180 KEFFTVPVTT AEFAVMKTAC SFALPHILGW DRLTNHPSRE PRRTVGLPSK VDPQFLDSEW 240 DK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 6e-89 | 57 | 216 | 10 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 6e-89 | 57 | 216 | 10 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 6e-89 | 57 | 216 | 10 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 6e-89 | 57 | 216 | 10 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023904622.1 | 1e-175 | single-stranded DNA-binding protein WHY2, mitochondrial isoform X1 | ||||
Refseq | XP_023904623.1 | 1e-175 | single-stranded DNA-binding protein WHY2, mitochondrial isoform X2 | ||||
Swissprot | D9J034 | 1e-102 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A2I4FRC2 | 1e-140 | A0A2I4FRC2_JUGRE; single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
STRING | XP_007147230.1 | 1e-106 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11383 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 4e-94 | WHIRLY 2 |