PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold05198-augustus-gene-0.14-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 499aa MW: 54327.9 Da PI: 6.7497

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold05198-augustus-gene-0.14-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.5e-39	106	166	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+++ maker-scaffold05198-augustus-gene-0.14-mRNA-1 106 PDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHVT 166 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-29	98	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.9E-32	108	164	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.528	110	164	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	112	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MSCGGDLCEE TSKDPGIKLF GRTIPLPECQ IQPNSQLMDA CSDITSAEVE SSYAENLGNH 60 EKSTDLGDRN EGPQTPMQVG PQVYPTPKKD QIDTNSTEEE KVFKKPDKIL QCPRCNSLDT 120 KFCYFNNYNV NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKHVTSHYH QLIVSSNGLP 180 TRLEAQDSSN HQLLSCGESS TAFRSSTGNE RVLKFGPEAP LCESMETVLN IRDQKRCAEM 240 GSVNVGENGE EPSSCRSSMT FSSNQGKQLP ENVVQKERVR MPGSCYELNT PHPLHCYPVP 300 PWGVQWTAGS RNFTSVETAQ QTSECVSVPN SSNPKPVQLY PAPMLAVPGF CPPQVPFQFI 360 PATYLGCMPV CAAGAGSVSL TGSSGCLSLS SSASNSSCSG NGSPTLGKHS RLYTDEEKSE 420 TCVLVPKTLR IEDPDEASKS PFWATLGCKP GQKKSMSRGT IFGTFEPKVD DMSHIADASH 480 ILEANPAALS RSHTFKEST

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MSCGGDLCEE TSKDPGIKLF GRTIPLPECQ IQPNSQLMDA CSDITSAEVE SSYAENLGNH  60
EKSTDLGDRN EGPQTPMQVG PQVYPTPKKD QIDTNSTEEE KVFKKPDKIL QCPRCNSLDT  120
KFCYFNNYNV NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKHVTSHYH QLIVSSNGLP  180
TRLEAQDSSN HQLLSCGESS TAFRSSTGNE RVLKFGPEAP LCESMETVLN IRDQKRCAEM  240
GSVNVGENGE EPSSCRSSMT FSSNQGKQLP ENVVQKERVR MPGSCYELNT PHPLHCYPVP  300
PWGVQWTAGS RNFTSVETAQ QTSECVSVPN SSNPKPVQLY PAPMLAVPGF CPPQVPFQFI  360
PATYLGCMPV CAAGAGSVSL TGSSGCLSLS SSASNSSCSG NGSPTLGKHS RLYTDEEKSE  420
TCVLVPKTLR IEDPDEASKS PFWATLGCKP GQKKSMSRGT IFGTFEPKVD DMSHIADASH  480
ILEANPAALS RSHTFKEST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002525674.1	0.0	cyclic dof factor 1
TrEMBL	A0A2N9IFW6	0.0	A0A2N9IFW6_FAGSY; Uncharacterized protein
STRING	XP_002525674.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-43	cycling DOF factor 2