PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04972-snap-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 2211aa    MW: 248817 Da    PI: 4.8768
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04972-snap-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.3e-10392437146
                                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayft 46 
                                                l++lL+ cA+avs+gd + a++lL++++++++p gd  qRla++f+
  maker-scaffold04972-snap-gene-0.10-mRNA-1 392 LRSLLILCAQAVSTGDGRTANELLKQIRQHSTPFGDGSQRLAHFFA 437
                                                6899****************************************97 PP
2GRAS246.11.4e-75439698116373
                                       GRAS 116 DfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                                                Df+i++G+QWp L+q L++Rpeg+p+lRiTg++ p++g   +e +eetg+rL+k++++++vpfe+n++
  maker-scaffold04972-snap-gene-0.10-mRNA-1 439 DFGIQYGFQWPLLIQFLSKRPEGAPKLRITGIDLPQPGfrPAECIEETGRRLEKYCNRFKVPFEYNAI 506
                                                9************************************9*99*************************** PP

                                       GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                                                +++++e++++eeL+++++E+laVn+++++++llde+v+ +s+rd+vL+l+++++P++++ +  + ++n
  maker-scaffold04972-snap-gene-0.10-mRNA-1 507 ASQKWETIRIEELKIERNEVLAVNCAFRMKNLLDETVEGTSPRDAVLNLIRRMKPDIFINSIVNGSYN 574
                                                999***************************************************************** PP

                                       GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317
                                                ++ Fl+rf eal ++sal+d +++++pr++ +r++ Ere+ gre++nv+a+eg er+er et+++ + 
  maker-scaffold04972-snap-gene-0.10-mRNA-1 575 TPFFLTRFREALFHFSALYDVFDVTIPRDNPQRVMFEREFYGREAMNVIANEGLERVERPETYKQSQF 642
                                                ******************************************************************** PP

                                       GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                                r+++aGFk++pl++ +++  ++ ++  + + + ++e+++++++gWk+r +++ S+W
  maker-scaffold04972-snap-gene-0.10-mRNA-1 643 RISRAGFKQLPLNQGIMSLFRAKMKAWYHKDFILDEDNHWMLQGWKGRIVYASSCW 698
                                                ****************************888************************* PP
3GRAS344.32e-105108414561373
                                       GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalpp 66  
                                                 l++lL+ cA+avs+gd + a++lL++++++++p gd  qRla++f+++L+arla+  +++  ++  
  maker-scaffold04972-snap-gene-0.10-mRNA-1 1084 LRSLLILCAQAVSTGDGRTANELLKQVRQHSTPFGDGSQRLAHFFANGLEARLAG--TSVGTQMFY 1147
                                                 6899***************************************************..555555555 PP

                                       GRAS   67 setseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaL 132 
                                                 ++ +  ++ e+l+a+++   ++P+ ++++   N++I  a+e+e+++Hi+Df+i +G+QWp L+q L
  maker-scaffold04972-snap-gene-0.10-mRNA-1 1148 TSHRLLSTLEKLKAYQVHLSAFPFKRIAYTFSNKMIFHAAEKETTLHIVDFGILYGFQWPLLIQFL 1213
                                                 555555699********************************************************* PP

                                       GRAS  133 asRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 
                                                 ++Rpeg+p+lRiTg++ p++g   +e +eetg+rL+ ++++++vpfe+n+++++++e++++eeL++
  maker-scaffold04972-snap-gene-0.10-mRNA-1 1214 SKRPEGAPKLRITGIDLPQPGlrPAECIEETGRRLEMYCNRFNVPFEYNAIASQKWETIRIEELKI 1279
                                                 **********************99***************************999************ PP

                                       GRAS  197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 
                                                 +++E+laVn+++++++llde+v+ +s+rd+vL+l+++++P++++ +  + ++n++ Fl+rf eal 
  maker-scaffold04972-snap-gene-0.10-mRNA-1 1280 ERNEVLAVNCAFRMKNLLDETVEGTSPRDAVLNLIRRMKPDIFINSIVNGSYNAPFFLTRFREALF 1345
                                                 ****************************************************************** PP

                                       GRAS  263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328 
                                                 ++sal+d +++++pr++ +r++ Ere+ gre++nv+a+eg er+er et+++ + r+++aGFk++p
  maker-scaffold04972-snap-gene-0.10-mRNA-1 1346 HFSALYDVFDVTIPRDNPQRVMFEREFYGREAMNVIANEGLERVERPETYKQSQFRISRAGFKQLP 1411
                                                 ****************************************************************** PP

                                       GRAS  329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 
                                                 l++++++  k+ ++  + + + ++e+++++++gWk+r +++ S+W
  maker-scaffold04972-snap-gene-0.10-mRNA-1 1412 LNQEIMSLFKAKMKAWYHKDFILDEDKHWMLQGWKGRIVYASSCW 1456
                                                 *****************888************************* PP
4GRAS352.28.4e-108184022082373
                                       GRAS    2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalpps 67  
                                                 + lL+ cA+avs+gd + a++lL++++++++p gd  qR+a+yf+++L+arla+  +++ +++  +
  maker-scaffold04972-snap-gene-0.10-mRNA-1 1840 RGLLILCAQAVSAGDGRTANELLKQIRQHSTPFGDGSQRVAHYFANGLEARLAG--TSIGSQMVYK 1903
                                                 679**************************************************9..8999999888 PP

                                       GRAS   68 etseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa 133 
                                                 + s     e+l+a+k++  ++P+ k+s+    ++Il a+e++++vHi+Df+i +G+QWp L+q+L+
  maker-scaffold04972-snap-gene-0.10-mRNA-1 1904 RVS---ALEKLKAYKVYLSACPFKKMSYGFSIKMILLAAEKATTVHIVDFGIHYGFQWPLLIQKLS 1966
                                                 888...9*********************************************************** PP

                                       GRAS  134 sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 
                                                 +Rpeg+p+lRiTg++ p++g   +e +eetg+rL++++++++vpfe+n+++++++e++++eeL+++
  maker-scaffold04972-snap-gene-0.10-mRNA-1 1967 TRPEGAPKLRITGIDLPQPGfrPAECIEETGRRLERYCSRFNVPFEYNAIASQKWETIRIEELKIE 2032
                                                 *******************9*99***************************999************* PP

                                       GRAS  198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263 
                                                 ++E+laVn+++q+++llde+v+ +s+rd+vL+l+++++P+++v +  + + n++ Fl rf eal +
  maker-scaffold04972-snap-gene-0.10-mRNA-1 2033 RNEVLAVNCAFQMKNLLDETVEGTSPRDAVLNLIRRMKPDIFVNSIANGSFNAPFFLIRFREALFH 2098
                                                 ****************************************************************** PP

                                       GRAS  264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329 
                                                 +s ++d ++a++pr++ er ++Ere+ gr+++nv+aceg er+er et+++ + r+++aGFk++pl
  maker-scaffold04972-snap-gene-0.10-mRNA-1 2099 FSGIYDVFDATIPRDNPERLMLEREFCGRDAMNVIACEGLERVERPETYKQSQVRISRAGFKKLPL 2164
                                                 ****************************************************************** PP

                                       GRAS  330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 
                                                 +++ ++ +++ ++  + + + ++e+s+++++gWk+r L++ S+W
  maker-scaffold04972-snap-gene-0.10-mRNA-1 2165 NQELMSVIRAKIKAWYHKDFILDEDSDWMLQGWKGRILYASSCW 2208
                                                 ****************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.956284679IPR005202Transcription factor GRAS
PfamPF035142.2E-7392437IPR005202Transcription factor GRAS
PfamPF035144.8E-73439698IPR005202Transcription factor GRAS
PROSITE profilePS5098562.19810581437IPR005202Transcription factor GRAS
PfamPF035147.0E-10310841456IPR005202Transcription factor GRAS
PROSITE profilePS5098563.02118132189IPR005202Transcription factor GRAS
PfamPF035142.9E-10518402208IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 2211 aa     Download sequence    Send to blast
MSPNSEDQFS NLIDEYTFNQ LSPLPTTDLN FLEGPNLLSD VDLGPTSFEP SITTTDGPEG  60
QPYDPPHVVM PPTLQADSTT SPDDNDFSET VFKYMNQIIM EENIENKPCM FYDPLGLKDT  120
EKSFYDALGP KNPPLPNQNS LESPGLSSSS GDNGTNSTSS SSTVIDALWL SDLGEHNYQP  180
SLSPPPILGE YNAVQSNFNP TDQSQFFGNL SDDSVNHFGD GLAVMAQNIF TNSESILQFR  240
RGLEEASKFL PKSNNLVINL ESNTVSSSEW KKGEVLKVES LVVKGEKESD LSDGSRGRKN  300
HQREEIELEE GRSIKQTAVY VEESEETELS EMLDKVLLCT DAPPSLYGDN CEPLQNDASK  360
VSPQTKGQVQ GANGGKGSRN KKQGKKKETV DLRSLLILCA QAVSTGDGRT ANELLKQIRQ  420
HSTPFGDGSQ RLAHFFANDF GIQYGFQWPL LIQFLSKRPE GAPKLRITGI DLPQPGFRPA  480
ECIEETGRRL EKYCNRFKVP FEYNAIASQK WETIRIEELK IERNEVLAVN CAFRMKNLLD  540
ETVEGTSPRD AVLNLIRRMK PDIFINSIVN GSYNTPFFLT RFREALFHFS ALYDVFDVTI  600
PRDNPQRVMF EREFYGREAM NVIANEGLER VERPETYKQS QFRISRAGFK QLPLNQGIMS  660
LFRAKMKAWY HKDFILDEDN HWMLQGWKGR IVYASSCWVP DHFSNLINEY TFNQLSPPPT  720
TDLNLLESPN LSSDLDLGPT GFEPSITTTV GLEGQPYDPP HIIPPMLQAD FTSSPDDSDF  780
SETVLKYINQ ILMEENIENK PCMFYDPLGL KDTEKSFYDA LGQNYPPLPN LNSVDSPVFS  840
SSSCDYGTSS TSGSSTVNDS QGLSDLGEHN YRSSFSPPPI LGEYNAVQSN FNPTDQSQFF  900
GNLSDDSVNH FGDGLAVMAQ NFFTNSESIL QFRRGLEEAS KFLPKSNNLV IDLESNMVSS  960
SEWKGEDLKV ESLVVKGEKK SDSSDGSRGR KNHEREEIEF EEGRSNKQTA VYVEESEETE  1020
LSEMLDKVLL CTDAPPSLYG DNCEPFQNDA SKASSQTKGQ AQGANGGKGS RNKKQGKKKQ  1080
TVDLRSLLIL CAQAVSTGDG RTANELLKQV RQHSTPFGDG SQRLAHFFAN GLEARLAGTS  1140
VGTQMFYTSH RLLSTLEKLK AYQVHLSAFP FKRIAYTFSN KMIFHAAEKE TTLHIVDFGI  1200
LYGFQWPLLI QFLSKRPEGA PKLRITGIDL PQPGLRPAEC IEETGRRLEM YCNRFNVPFE  1260
YNAIASQKWE TIRIEELKIE RNEVLAVNCA FRMKNLLDET VEGTSPRDAV LNLIRRMKPD  1320
IFINSIVNGS YNAPFFLTRF REALFHFSAL YDVFDVTIPR DNPQRVMFER EFYGREAMNV  1380
IANEGLERVE RPETYKQSQF RISRAGFKQL PLNQEIMSLF KAKMKAWYHK DFILDEDKHW  1440
MLQGWKGRIV YASSCWVPDH FSNLINEYTF NQLSPLPTTD LNFLESPNLS SDLDLGPTGF  1500
EPSITTTVGL EGQPYDTPHI IPPMLQADFT SSPDDSDFSE TVLKYINQIL MEENIENKPC  1560
MFYDPLGLKD TEKSFYDALG QKNPPLPNQN CVESPALSTS SGDYGTNSTS SSSTVNDALW  1620
PSDLGEHNYR PSLSPPPILG EYNAVQSNFN PTDQSQVFGN LSDDSVSHFG DGLEVMAQNI  1680
FTSSESILQF RRGLEEASKF LPKSNNLVID LENNTVSSSE WKGEDLKVES LVVKGEKESD  1740
SLDGSRGRKN REREEIELEE GRSNKQTAVY VEEDELSDMF DKVLLCTDAP ASMCGENCEP  1800
LQNDASKASL HTIGQAQGAN GGKGSRNKKQ NKKKETVDLR GLLILCAQAV SAGDGRTANE  1860
LLKQIRQHST PFGDGSQRVA HYFANGLEAR LAGTSIGSQM VYKRVSALEK LKAYKVYLSA  1920
CPFKKMSYGF SIKMILLAAE KATTVHIVDF GIHYGFQWPL LIQKLSTRPE GAPKLRITGI  1980
DLPQPGFRPA ECIEETGRRL ERYCSRFNVP FEYNAIASQK WETIRIEELK IERNEVLAVN  2040
CAFQMKNLLD ETVEGTSPRD AVLNLIRRMK PDIFVNSIAN GSFNAPFFLI RFREALFHFS  2100
GIYDVFDATI PRDNPERLML EREFCGRDAM NVIACEGLER VERPETYKQS QVRISRAGFK  2160
KLPLNQELMS VIRAKIKAWY HKDFILDEDS DWMLQGWKGR ILYASSCWVP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-4338122107379Protein SCARECROW
5b3h_D1e-4338122107379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9004800.0JN900480.1 Quercus robur scarecrow-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904339.10.0scarecrow-like protein 33 isoform X1
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A498IRE00.0A0A498IRE0_MALDO; Uncharacterized protein
STRINGXP_008223833.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]