PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold04853-augustus-gene-0.10-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | TALE | ||||||||
Protein Properties | Length: 174aa MW: 20346.1 Da PI: 7.725 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.6 | 5.9e-10 | 101 | 136 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ maker-scaffold04853-augustus-gene-0.10-mRNA-1 101 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 136 5679*****************************985 PP | |||||||
2 | ELK | 39.3 | 1.4e-13 | 56 | 77 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s maker-scaffold04853-augustus-gene-0.10-mRNA-1 56 ELKNHLLRKYSGYLSSLKQELS 77 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 9.6E-11 | 56 | 77 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.296 | 56 | 76 | IPR005539 | ELK domain |
SMART | SM01188 | 3.5E-7 | 56 | 77 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.876 | 76 | 139 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.99E-20 | 77 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.0E-12 | 78 | 143 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-28 | 81 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.40E-12 | 88 | 140 | No hit | No description |
Pfam | PF05920 | 4.4E-17 | 96 | 135 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 114 | 137 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MLKCYAMKLV ITVQILHSHL NTDEKCEGVG SSEEDQDNSA GETELPEIDP RAEDRELKNH 60 LLRKYSGYLS SLKQELSKKK KKGKLPKDAR QKLLSWWELH YKWPYPSETE KVALAESTGL 120 DQKQINNWFI NQRKRHWKPS EDMQFMVMDG LHPQNATLYM DGHYMADGHY RLGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023903746.1 | 1e-111 | homeobox protein knotted-1-like 2 | ||||
Swissprot | O04135 | 6e-96 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A2N9GWS6 | 1e-108 | A0A2N9GWS6_FAGSY; Uncharacterized protein | ||||
TrEMBL | V5K8C3 | 1e-106 | V5K8C3_9ROSI; KNOX transcription factor 3 | ||||
STRING | EOY15624 | 2e-98 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4584 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 7e-80 | KNOTTED-like from Arabidopsis thaliana |