PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold04807-snap-gene-0.13-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | G2-like | ||||||||
Protein Properties | Length: 234aa MW: 25883.3 Da PI: 10.3389 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 84.8 | 8.7e-27 | 184 | 234 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r+rWtp+LH++Fv++ve+LGG+e+AtPk+il+lm+ + Lt+ hvkSHLQ maker-scaffold04807-snap-gene-0.13-mRNA-1 184 KKRIRWTPDLHNQFVKCVERLGGPERATPKAILKLMETNLLTIFHVKSHLQ 234 78************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.522 | 180 | 234 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-12 | 183 | 234 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.1E-20 | 184 | 234 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 184 | 234 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-6 | 188 | 234 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGVQTPAMRE VAQQLNFEPP KLSNSTMTNP FGSITSALQI NERYMGFQQQ FGNSPLAASK 60 DQQFGNSPLA ISQFPSFDSQ VLSCQSSGKS FSLTDSAVQA AGSNLDFRDS LQSLVKSHLY 120 SSSDKSNVPR NNTCRSNRFP HDQNMLLGVD SAAFVRRQFS LSSYANQGLK VCHSASSRPA 180 PTLKKRIRWT PDLHNQFVKC VERLGGPERA TPKAILKLME TNLLTIFHVK SHLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-18 | 184 | 234 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-18 | 184 | 234 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-18 | 184 | 234 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-18 | 184 | 234 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-18 | 184 | 234 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-18 | 184 | 234 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-18 | 184 | 234 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-18 | 184 | 234 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-18 | 184 | 234 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-18 | 184 | 234 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-18 | 184 | 234 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-18 | 184 | 234 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023906754.1 | 1e-158 | protein PHOSPHATE STARVATION RESPONSE 2-like isoform X1 | ||||
Refseq | XP_023906755.1 | 1e-158 | protein PHOSPHATE STARVATION RESPONSE 2-like isoform X2 | ||||
TrEMBL | A0A2I4GI88 | 2e-59 | A0A2I4GI88_JUGRE; protein PHR1-LIKE 1-like isoform X2 | ||||
TrEMBL | A0A2I4GIA0 | 2e-59 | A0A2I4GIA0_JUGRE; protein PHR1-LIKE 1-like isoform X1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.2 | 7e-22 | G2-like family protein |