PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04579-augustus-gene-0.18-mRNA-4
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GATA
Protein Properties Length: 309aa    MW: 33430.2 Da    PI: 4.6736
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04579-augustus-gene-0.18-mRNA-4genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16219254134
                                           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                                                    C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg
  maker-scaffold04579-augustus-gene-0.18-mRNA-4 219 CTHCGISSksTPMMRRGPAGPRTLCNACGLKWANKG 254
                                                    *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009798.1E-1279114IPR010399Tify domain
PROSITE profilePS5132014.75379114IPR010399Tify domain
PfamPF062001.6E-1282113IPR010399Tify domain
PfamPF062032.0E-16146188IPR010402CCT domain
PROSITE profilePS5101713.215146188IPR010402CCT domain
SMARTSM004012.6E-12213266IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.156213270IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-12216265No hitNo description
Gene3DG3DSA:3.30.50.102.6E-15217260IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.44E-15218268No hitNo description
PROSITE patternPS003440219246IPR000679Zinc finger, GATA-type
PfamPF003204.9E-14219254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAESNHEASI YNSNVQQQQQ QQNEIEDEDD DVVGGEEESI DNPQMRFVPV STLNGDVQEV  60
APNAVFVPGA SDYPPVNTVN GGSDQLTLSF QGEVYVFDAV SPDKVQAVLL LLGGYEIPSG  120
IPAVGTIPLN QRGMNDFSGR SIQPQRAASL SRFREKRKER CFDKKIRYNV RKEVALRMQR  180
KKGQFTSSKA ISEELGSDTS VYSTTQGSGQ DDSMQETICT HCGISSKSTP MMRRGPAGPR  240
TLCNACGLKW ANKGILRDLS KVSNVGIQDP PVKLIEQNNG EANDLVVVTT ATAIVPSSNG  300
DVSAVTAES
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023871959.10.0GATA transcription factor 28-like
SwissprotQ8H1G03e-75GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2I4DVR11e-167A0A2I4DVR1_JUGRE; GATA transcription factor 24-like
STRINGXP_010112233.11e-151(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-77ZIM-like 1