PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04568-augustus-gene-0.12-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 275aa    MW: 31353.3 Da    PI: 6.9062
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04568-augustus-gene-0.12-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-1877129456
                                                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                       Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                                    + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  maker-scaffold04568-augustus-gene-0.12-mRNA-2  77 KKRLSLEQVKALEKSFEIGNKLEPERKMHLAKALGLQPRQIAIWFQNRRARWK 129
                                                    556899**********************************************9 PP
2HD-ZIP_I/II129.21.7e-4175165191
                                    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdye 64 
                                                    ekk+rls eqvk+LE+sFe  +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdye
  maker-scaffold04568-augustus-gene-0.12-mRNA-2  75 EKKKRLSLEQVKALEKSFEIGNKLEPERKMHLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYE 138
                                                    69************************************************************** PP

                                    HD-ZIP_I/II  65 aLkraydalkeenerLekeveeLreel 91 
                                                    +Lk++++alk++n++L++++++L++el
  maker-scaffold04568-augustus-gene-0.12-mRNA-2 139 VLKKQFEALKADNDNLQTQNKKLTAEL 165
                                                    ************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.1E-1969133IPR009057Homeodomain-like
PROSITE profilePS5007116.89271131IPR001356Homeobox domain
SMARTSM003891.7E-1874135IPR001356Homeobox domain
CDDcd000865.12E-1776132No hitNo description
PfamPF000461.7E-1577129IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1978138IPR009057Homeodomain-like
PRINTSPR000312.7E-5102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000312.7E-5111127IPR000047Helix-turn-helix motif
PfamPF021834.8E-14131171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAFPTSHGFM FQTHEDQDHL PSSNTFPSCP PQHYHGAVPF MMKRSMSFSG IDNNKCEEVV  60
HGDDELSDDG SQLGEKKKRL SLEQVKALEK SFEIGNKLEP ERKMHLAKAL GLQPRQIAIW  120
FQNRRARWKT KQLEKDYEVL KKQFEALKAD NDNLQTQNKK LTAELLALKN RDTNEVGVKC  180
IKKEAEGSWS NGSENSCDIN LDISRTPVMN SPVSSQLSSH HLFPSSLRPT SMTQLLQGSS  240
RPDLQSLKID HMAQDESLCN MFTGIEDQHN FWPWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929196.10.0homeobox-leucine zipper protein HAT7-like
SwissprotQ8LAT07e-86ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A2N9I4L21e-172A0A2N9I4L2_FAGSY; Uncharacterized protein
STRINGEOY034141e-145(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.13e-88homeobox protein 20