PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04520-snap-gene-0.19-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 354aa    MW: 40136.3 Da    PI: 6.9616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04520-snap-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-161461148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                               rg W++eEde+l +++  +G g+W ++++  g+ R++k+c++rw +yl
  maker-scaffold04520-snap-gene-0.19-mRNA-1 14 RGLWSPEEDEKLFNYISTYGHGCWGSVPKLAGLQRCGKSCRLRWTNYL 61
                                               788*******************************************97 PP
2Myb_DNA-binding32.42.1e-1067130146
                                                TSSS-HHHHHHHHHHHHHTTTT...................-HHHHHHHHTTTS-HHHHHHHHHH CS
                            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...................tWktIartmgkgRtlkqcksrwqk 46 
                                                rg+++t+E  l+++++  lG++                    +k Ia+ ++ gRt++++k++w++
  maker-scaffold04520-snap-gene-0.19-mRNA-1  67 RGSFSTQEAALIIELHGSLGNKyllflsqkclnyyqfyyknLFKDIAKQLP-GRTDNEIKNFWHS 130
                                                899************************************************.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-25664IPR009057Homeodomain-like
PROSITE profilePS5129422.519965IPR017930Myb domain
SMARTSM007173.7E-131363IPR001005SANT/Myb domain
PfamPF002491.0E-141461IPR001005SANT/Myb domain
SuperFamilySSF466893.52E-211465IPR009057Homeodomain-like
CDDcd001671.33E-111761No hitNo description
Gene3DG3DSA:1.10.10.606.4E-1865136IPR009057Homeodomain-like
PROSITE profilePS512949.19366136IPR017930Myb domain
SMARTSM007171.8E-666134IPR001005SANT/Myb domain
PfamPF002494.2E-867129IPR001005SANT/Myb domain
CDDcd001677.43E-598129No hitNo description
SuperFamilySSF466893.52E-21102133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MRHHSCCNKQ KVKRGLWSPE EDEKLFNYIS TYGHGCWGSV PKLAGLQRCG KSCRLRWTNY  60
LRPDLKRGSF STQEAALIIE LHGSLGNKYL LFLSQKCLNY YQFYYKNLFK DIAKQLPGRT  120
DNEIKNFWHS SMKKKLLSHD VPAIATFPDM HCNGNSEEGF SSLIANPKWI RSSQQDQLYL  180
PTPTSMLQGF DHGDLKLEQT NYGANLVHFP PLIAPPSYSS SYDPLWSLGY QPHEQFDPNQ  240
EDQNFSTSGV THDICDKLIC KGMTAPHYDE DPLTVPMIPK PCEIITGNFC GRPYSCASQE  300
LDPLARIPYF PAGFNNPYDP HVPNNLTENM DSMSSSVSIG QFVTNPNDPS SWGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-21141367108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346552e-35KM034655.1 Jatropha curcas clone JcMYB035 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885143.11e-174transcription factor MYB24-like
TrEMBLA0A2N9I8M21e-161A0A2N9I8M2_FAGSY; Uncharacterized protein
STRINGEOY271411e-119(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.29e-65myb domain protein 26