PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold04399-augustus-gene-0.11-mRNA-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 41109.8 Da PI: 8.3074 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 150.2 | 1e-46 | 1 | 114 | 15 | 129 |
NAM 15 vveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 +++yL++kv ++++++ ++i e+d++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat maker-scaffold04399-augustus-gene-0.11-mRNA-2 1 ITCYLTEKVVNSNFSA-SAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRAT 63 679***********99.88***************99999************************* PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +sgyWkatgkdke+++ kg lvg+kktLvfykgrapkgekt+Wvmheyrle maker-scaffold04399-augustus-gene-0.11-mRNA-2 64 ESGYWKATGKDKEIYKGKGCLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 114 ****************9********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 49.844 | 1 | 138 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-20 | 1 | 113 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-52 | 1 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
ITCYLTEKVV NSNFSASAIG EADLNKCEPW DLPKKAKMGE KEWYFFCQRD RKYPTGMRTN 60 RATESGYWKA TGKDKEIYKG KGCLVGMKKT LVFYKGRAPK GEKTNWVMHE YRLEGKFSYY 120 NLPKTAKDEW VVCRIFHKSN SGIKKSSTPD GLLRMNSFGD DLLDISSLPP LMDPPFSDTN 180 KPGYGDNNNF SFKGSSSYFP NDQQQQQQQQ LKQQDQKLFQ MPTNNYTSNT SYHNPIPNQG 240 LYPQTQVPNQ YPFNFPANPI QSGYLHQGRS TGTSSSIPSS NYGFGVNEQG ILERQCKVEQ 300 FSSNQSMSMV SHSQDTGLST ADMNAEISSL VSKQQDNRSY DDLIEGPSLG PIADFDRFNW 360 DY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-44 | 4 | 144 | 34 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-44 | 4 | 144 | 34 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-44 | 4 | 144 | 34 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-44 | 4 | 144 | 34 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-43 | 4 | 144 | 37 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-43 | 4 | 144 | 37 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-43 | 4 | 144 | 37 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-43 | 4 | 144 | 37 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-43 | 4 | 144 | 37 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-43 | 4 | 144 | 37 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-43 | 4 | 144 | 37 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-43 | 4 | 144 | 37 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-44 | 4 | 144 | 34 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-44 | 4 | 144 | 34 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023906757.1 | 0.0 | NAC domain-containing protein 87-like | ||||
Swissprot | Q9FK44 | 1e-102 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A2N9IYK1 | 1e-160 | A0A2N9IYK1_FAGSY; Uncharacterized protein | ||||
STRING | VIT_08s0007g07640.t01 | 1e-147 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 8e-94 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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