PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04251-augustus-gene-0.18-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 292aa    MW: 32333.2 Da    PI: 9.9981
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04251-augustus-gene-0.18-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.3e-1452135291
                                                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTH CS
                                             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGW 65 
                                                     k + ps+v    +l lp +f++ + +++ ++  +tl de+g ++   +  rk++    l++GW
  maker-scaffold04251-augustus-gene-0.18-mRNA-2  52 TKSMQPSHVAGGFWLGLPVDFCKLN-LPS-RDDVMTLIDEDGDEYPTIYLARKRG----LSGGW 109
                                                    58899*****************666.443.4558***************555555....9**** PP

                                                    HHHHHHHT--TT-EEEEEE-SSSEE. CS
                                             B3  66 keFvkangLkegDfvvFkldgrsefe 91 
                                                    k+F+ a++L  gD vvF+l+gr++f+
  maker-scaffold04251-augustus-gene-0.18-mRNA-2 110 KGFAVAHHLVHGDAVVFQLIGRTTFK 135
                                                    ********************998875 PP
2B340.26e-132122821491
                                                    T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                                             B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                                    + l lp +f e++      +  +tl de+g ++  k+  +k++    l++GWk+F+ a++L  g
  maker-scaffold04251-augustus-gene-0.18-mRNA-2 212 H-LGLPSNFSERNLP--SHDAVMTLIDEDGDEYPTKYLAKKSG----LSGGWKGFAVAHHLAYG 268
                                                    4.889*****99942..34568***************544444....9**************** PP

                                                    -EEEEEE-SSSEE. CS
                                             B3  78 DfvvFkldgrsefe 91 
                                                    D +vF+l+gr+ f+
  maker-scaffold04251-augustus-gene-0.18-mRNA-2 269 DALVFQLIGRTAFK 282
                                                    ********988773 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-2045135IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-1646136IPR015300DNA-binding pseudobarrel domain
CDDcd100174.27E-2349133No hitNo description
PROSITE profilePS5086310.60251142IPR003340B3 DNA binding domain
SMARTSM010192.0E-1751147IPR003340B3 DNA binding domain
PfamPF023625.0E-1252135IPR003340B3 DNA binding domain
CDDcd100173.85E-17203283No hitNo description
SMARTSM010192.7E-10207290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-13208283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-16208284IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.996213289IPR003340B3 DNA binding domain
PfamPF023621.6E-10213282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
VAVDRVAIPR RIFGRQRSLT NLVLASPEAI AEADEKAEKL VSGLPPSYPI LTKSMQPSHV  60
AGGFWLGLPV DFCKLNLPSR DDVMTLIDED GDEYPTIYLA RKRGLSGGWK GFAVAHHLVH  120
GDAVVFQLIG RTTFKTKQAK PRVVQKQVAE VRRSTRFANK PAPIYREVAM DRVAMPRRIF  180
GRKRSLSNLV LASSEAVAEA KEKAENYYGV YHLGLPSNFS ERNLPSHDAV MTLIDEDGDE  240
YPTKYLAKKS GLSGGWKGFA VAHHLAYGDA LVFQLIGRTA FKVIDHLSMA FN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023883749.14e-91B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ47e-47Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A218X7171e-99A0A218X717_PUNGR; Uncharacterized protein
STRINGEMJ229613e-96(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-45B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]