PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04205-snap-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HSF
Protein Properties Length: 305aa    MW: 33038.4 Da    PI: 5.4756
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04205-snap-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.86.2e-37101022103
                                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SS CS
                               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdee 69 
                                                Fl+k+y++++d+ ++++isw+e+g++fvv+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++
  maker-scaffold04205-snap-gene-0.15-mRNA-1  10 FLTKTYQLVDDPVTDDVISWNEDGSTFVVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK 77 
                                                9****************************************************************999 PP

                                                BTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                               HSF_DNA-bind  70 kkskskekiweFkhksFkkgkkellekikrkkse 103
                                                         weF++++Fk+ +kell++i+r+k++
  maker-scaffold04205-snap-gene-0.15-mRNA-1  78 ---------WEFANENFKRAQKELLSQIRRRKTA 102
                                                .........**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-59699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.4E-38799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-33799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.5E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.9E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYQLVDD PVTDDVISWN EDGSTFVVWK TADFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFKRAQK ELLSQIRRRK TATSAPANTP ASGKHVDVGG  120
GGPSSSSNSG EDLGSTSTSS PDSKNPGSVE TTTNPTAQAS DLSGENEKLK KDNEMLSSEL  180
AQTKKQCDEL VAFLTEYLKV GPDQINHIIR QGSCGSSCVD EIIGGGGPII GKVDSIDDDD  240
ENNNNVVEDN GNGNGNGNGN GNGGEGLKLF GVWLKGNRKR GREEKMGFNN GSHTRPLAKE  300
MKVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-26610417125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886759.11e-168heat shock factor protein HSF24
SwissprotP223351e-106HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2N9H8W21e-149A0A2N9H8W2_FAGSY; Uncharacterized protein
STRINGcassava4.1_013174m1e-134(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.17e-84heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]