PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold03880-snap-gene-0.34-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NF-YC | ||||||||
Protein Properties | Length: 181aa MW: 20424.8 Da PI: 10.3962 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 26.1 | 1.8e-08 | 113 | 171 | 11 | 69 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeen 69 ++++ k h++P+ rik il++++ +i+ ea l+ ka e f+ e+t + + + maker-scaffold03880-snap-gene-0.34-mRNA-1 113 VDKEEAKTHRFPMNRIKTILRSQDSDLRITHEALFLVNKATEKFLEEFTKEAHACCVQD 171 45677899**************999999*******************998776655554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.21E-14 | 70 | 180 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.4E-15 | 122 | 181 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.6E-14 | 123 | 181 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MASSKKSTTE EKKSKETKPK NTPKKKNKTT STTKVNPEKN NNNNNNNKVS NGTVSDSSSD 60 VIIIPSSSIE SGQDEKQKPN KSSGANKGTA DTKSQKHKQK KQKRQEEEVN DVVDKEEAKT 120 HRFPMNRIKT ILRSQDSDLR ITHEALFLVN KATEKFLEEF TKEAHACCVQ DHKKSLAYKH 180 L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ207441 | 3e-97 | KJ207441.1 Quercus rubra microsatellite REO_433 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023918926.1 | 2e-84 | uncharacterized protein LOC112030471 isoform X1 | ||||
Refseq | XP_023918927.1 | 9e-85 | uncharacterized protein LOC112030471 isoform X2 | ||||
TrEMBL | A0A2I4EJI4 | 3e-51 | A0A2I4EJI4_JUGRE; DNA polymerase epsilon subunit C-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 1e-18 | nuclear factor Y, subunit C10 |