PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03868-snap-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SBP
Protein Properties Length: 797aa    MW: 89181.9 Da    PI: 5.8885
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03868-snap-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.72.5e-36134210177
                                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT- CS
                                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLak 68 
                                                +Cqv++Cead+se+k yhrrh+vC  +++a++v+++g ++r+CqqC++fh ls+fDe+krsCrr+L++
  maker-scaffold03868-snap-gene-0.15-mRNA-1 134 RCQVPECEADISELKGYHRRHRVCLRCANASEVFLDGDTKRYCQQCGKFHILSDFDEGKRSCRRKLER 201
                                                6******************************************************************* PP

                                                ------S-- CS
                                        SBP  69 hnerrrkkq 77 
                                                hn+rrr+k 
  maker-scaffold03868-snap-gene-0.15-mRNA-1 202 HNNRRRRKP 210
                                                *****9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.1E-27130196IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.274132209IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-33133213IPR004333Transcription factor, SBP-box
PfamPF031102.2E-26135209IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MEPPRVMEVH PAMTEEDPTS ALWDFGDLLD FTVDGHFSMS LDPDQLPSPP PQPPPPIIDQ  60
SLDFSQEDSQ VDTDPPGPSS GKIRKRDPRL TCTNYLAGRI PCACPEMDEK LEMEGSLRGK  120
KRSRTVRVST RTARCQVPEC EADISELKGY HRRHRVCLRC ANASEVFLDG DTKRYCQQCG  180
KFHILSDFDE GKRSCRRKLE RHNNRRRRKP ADSGIADEKE PQGSLQTEDG PCDDETGKDS  240
LCLSSPIAET EAFLESEDGQ VTNLCSALDS QNIHGDASFT ASGETQMDGG KDNSKCSVSQ  300
LYDNKNAYSS MCPTGRISFK LYDWNPAEFP RRLRHQIFQW LANMPVELEG YIRPGCTILT  360
VFITMPKFMW AKLFEDPASY LLDFVAPGRM LSGKGIILVF MNDMIFRVMK GGTSVMRLKV  420
EVQAPRLHYV HPICFEAGKP MEFVACGSNL IQSKFRFLVS FAGKYLAHDY CVASKHGQTE  480
GDTASSFNHQ LYKICIPQTE PDLCGPAFVE VENESGLSNF IPILIGDKEI CAEMEILQQR  540
FDASPFLKES ESVAIGPMSD SCEVSALRQS TFSEFLLDVA WLIKEPASEN FQQFITASQI  600
QRFNSLLSFL MCNDSTTILE KLLQKLKIVI SNMEFNSVAK GTFDADLSLL QKYLDNARAI  660
LCKKHKKSES SMQSGAEPKG DHFSESRFQE NVLLVPINRK DMEIITNDKL GVEICSTSTC  720
KSETVPLLNR EVVMNVDPAW PRKSCGRIFS GASLGSRPGI FVIGFAAVCL GMCAVLLHPH  780
KVSEFAVSIR RCLFDRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-45133214485squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195207RRKLERHNNRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269|PubMed:19122104, ECO:0000269|PubMed:22374396, ECO:0000269|PubMed:25516599, ECO:0000269|PubMed:26511915, ECO:0000269|PubMed:27352843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5051401e-147AJ505140.1 Castanea sativa microsatellite DNA, locus EMCs17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897327.10.0squamosa promoter-binding-like protein 7
SwissprotQ8S9G80.0SPL7_ARATH; Squamosa promoter-binding-like protein 7
TrEMBLA0A2N9ETS00.0A0A2N9ETS0_FAGSY; Uncharacterized protein
STRINGVIT_05s0020g02160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Zhang H, et al.
    MicroRNA408 is critical for the HY5-SPL7 gene network that mediates the coordinated response to light and copper.
    Plant Cell, 2014. 26(12): p. 4933-53
    [PMID:25516599]
  2. Zhao Y, et al.
    MicroRNA857 Is Involved in the Regulation of Secondary Growth of Vascular Tissues in Arabidopsis.
    Plant Physiol., 2015. 169(4): p. 2539-52
    [PMID:26511915]
  3. Perea-García A, et al.
    Modulation of copper deficiency responses by diurnal and circadian rhythms in Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(1): p. 391-403
    [PMID:26516126]
  4. Gielen H,Remans T,Vangronsveld J,Cuypers A
    Toxicity responses of Cu and Cd: the involvement of miRNAs and the transcription factor SPL7.
    BMC Plant Biol., 2016. 16(1): p. 145
    [PMID:27352843]
  5. Yan J, et al.
    Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis.
    Plant Cell, 2017. 29(12): p. 3012-3029
    [PMID:29114014]
  6. Araki R, et al.
    SPL7 locally regulates copper-homeostasis-related genes in Arabidopsis.
    J. Plant Physiol., 2018.
    [PMID:29635212]