PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03851-augustus-gene-0.22-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 26139.6 Da    PI: 9.8008
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03851-augustus-gene-0.22-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.1e-30959151
                                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                                   krien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fsstgk++ey s
  maker-scaffold03851-augustus-gene-0.22-mRNA-1  9 KRIENQTNRQVTYSKRRNGIFKKAQELTVLCDAKVSIIMFSSTGKFHEYTS 59
                                                   79***********************************************75 PP
2K-box843.2e-2871165195
                                          K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkk 64 
                                                    yqk+ +++l+++++e++q++l+kLk+ ++ L re+R+++GedL+ Lsl +L++L++++ +sl  
  maker-scaffold03851-augustus-gene-0.22-mRNA-1  71 YQKALDTDLWSSHYERMQENLRKLKEINNRLSREIRQRVGEDLNGLSLDDLRSLQHKVSSSLDI 134
                                                    78889999******************************************************** PP

                                          K-box  65 iRskKnellleqieelqkkekelqeenkaLr 95 
                                                    +R++K++++++q+e+ +kk k+l+e++ +L 
  maker-scaffold03851-augustus-gene-0.22-mRNA-1 135 VRARKYHVIKTQTETYKKKVKNLEERHGNLL 165
                                                    ***************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.095161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-38295IPR002100Transcription factor, MADS-box
CDDcd002651.80E-39280No hitNo description
PRINTSPR004041.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014864.8E-2082165IPR002487Transcription factor, K-box
PROSITE profilePS5129715.5984174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKIEIKR IENQTNRQVT YSKRRNGIFK KAQELTVLCD AKVSIIMFSS TGKFHEYTSP  60
SITTKKIYDQ YQKALDTDLW SSHYERMQEN LRKLKEINNR LSREIRQRVG EDLNGLSLDD  120
LRSLQHKVSS SLDIVRARKY HVIKTQTETY KKKVKNLEER HGNLLLDLRA RLEDPQYGLV  180
DNEGDYESTI ALTNGASNLY AFRLHSSHLD LHHAGGFESE DLRLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16162162MEF2C
5f28_B2e-16162162MEF2C
5f28_C2e-16162162MEF2C
5f28_D2e-16162162MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023911257.11e-163floral homeotic protein PMADS 1-like isoform X1
RefseqXP_023922130.11e-163floral homeotic protein PMADS 1-like isoform X1
SwissprotQ003J21e-133TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A2N9GR371e-140A0A2N9GR37_FAGSY; Uncharacterized protein
STRINGVIT_04s0023g02820.t011e-131(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.15e-80MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]