PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03527-augustus-gene-0.20-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MIKC_MADS
Protein Properties Length: 286aa    MW: 33054.2 Da    PI: 9.6136
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03527-augustus-gene-0.20-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.8e-28959151
                                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                                   krien   rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+ss
  maker-scaffold03527-augustus-gene-0.20-mRNA-1  9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59
                                                   79***********************************************96 PP
2K-box57.84.7e-2078157685
                                          K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                                                    ++++e + +++ ++el+ Lk+e+  Lq +q +llG+dL+   lkeLq++eqqL ++l  +++kK
  maker-scaffold03527-augustus-gene-0.20-mRNA-1  78 TSAVEYKAEKQESKELDVLKDEVARLQMKQLRLLGKDLTGVGLKELQHIEQQLSEGLLAVKEKK 141
                                                    4556777788999*************************************************** PP

                                          K-box  70 nellleqieelqkkek 85 
                                                    ++ll++q+e+++ k +
  maker-scaffold03527-augustus-gene-0.20-mRNA-1 142 EQLLMDQLEQSRLKCE 157
                                                    ***********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.352161IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.76E-42272No hitNo description
SuperFamilySSF554551.44E-31274IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-293859IPR002100Transcription factor, MADS-box
PfamPF014868.7E-1484155IPR002487Transcription factor, K-box
PROSITE profilePS512979.94186179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010047Biological Processfruit dehiscence
GO:0010094Biological Processspecification of carpel identity
GO:0010262Biological Processsomatic embryogenesis
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048833Biological Processspecification of floral organ number
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSSA  60
GMRRTLSRYN KCLDSMETSA VEYKAEKQES KELDVLKDEV ARLQMKQLRL LGKDLTGVGL  120
KELQHIEQQL SEGLLAVKEK KEQLLMDQLE QSRLKCEFVS NVIYFDIGFL PLWSWYRSSG  180
LCWRMKLCAN RQCNVEELRG FFPPAERPVP SYREYYPTER KNSRANHGVV SPDPALRRFY  240
PCRLSNAIAF TPRPSIMWLS TEIYRKMKEP GRETHSNDSG NQMDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20191194MEF2C
5f28_B2e-20191194MEF2C
5f28_C2e-20191194MEF2C
5f28_D2e-20191194MEF2C
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023925149.11e-150agamous-like MADS-box protein AGL15
TrEMBLA0A2N9J1871e-127A0A2N9J187_FAGSY; Uncharacterized protein
STRINGXP_008231548.11e-107(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-62AGAMOUS-like 15