PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold03517-augustus-gene-0.24-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | SBP | ||||||||
Protein Properties | Length: 109aa MW: 12653.6 Da PI: 8.3798 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 51.6 | 2.6e-16 | 24 | 56 | 18 | 50 |
HHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS SBP 18 hrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 ++rhkvCe h+ka+vvlv+g++qrfCqqCs+f maker-scaffold03517-augustus-gene-0.24-mRNA-1 24 KKRHKVCERHAKAAVVLVTGIRQRFCQQCSKFE 56 589*****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 12.391 | 1 | 82 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.4E-13 | 22 | 56 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 2.5E-14 | 23 | 56 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.8E-14 | 24 | 61 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
EEQEQECSDP YEDGEEEEVE YTRKKRHKVC ERHAKAAVVL VTGIRQRFCQ QCSKFECGPG 60 FMKFHNLMIT KRVVGTSWLV TMSGGGKPMQ TFRQRINKND KLPLWVVAC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-11 | SBP family protein |