PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold03483-snap-gene-0.23-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 252aa MW: 27830.8 Da PI: 9.9491 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 218.7 | 5.2e-68 | 85 | 223 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdl 68 s+yk+kaal+v++++p+f+ ldsg++k++++G++ll++a+a+++r+ydW++kq+f+ls+te+++lv l maker-scaffold03483-snap-gene-0.23-mRNA-1 85 SIYKGKAALTVEPRAPEFTPLDSGAFKISKDGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVCL 152 7******************************************************************* PP Whirly 69 askesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrs 136 ++kesceffhdp +++s+eGkvrk+lkvePlpdGsG+f+nlsv+n+l+++++s+++Pv++ae++vl+s maker-scaffold03483-snap-gene-0.23-mRNA-1 153 GAKESCEFFHDPYKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLLNVDDSIYIPVTRAEYTVLIS 220 ******************************************************************** PP Whirly 137 llv 139 +++ maker-scaffold03483-snap-gene-0.23-mRNA-1 221 AFN 223 996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 5.3E-77 | 74 | 244 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 4.08E-74 | 79 | 249 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.3E-60 | 86 | 220 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
MLRLQSLSSP LTTQNPKLHL NLNPTKRTAL KLNPNTNINS KTSLFVVKCQ QRFTTNTSSP 60 NNSSYASQTP PAAGTFPTRF FVGHSIYKGK AALTVEPRAP EFTPLDSGAF KISKDGFVLL 120 QFAPAAGVRQ YDWSRKQVFS LSVTEIGSLV CLGAKESCEF FHDPYKGKSE EGKVRKVLKV 180 EPLPDGSGHF FNLSVQNKLL NVDDSIYIPV TRAEYTVLIS AFNFILPYLI GWHAFANSIK 240 PEETSLVNSA NP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 1e-108 | 73 | 240 | 2 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 1e-108 | 73 | 240 | 2 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 1e-108 | 73 | 240 | 2 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 1e-108 | 73 | 240 | 2 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023928059.1 | 1e-179 | single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9M9S3 | 1e-118 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A2N9EBT3 | 1e-147 | A0A2N9EBT3_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_013407m | 1e-119 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6416 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-118 | ssDNA-binding transcriptional regulator |