PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03472-augustus-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Dof
Protein Properties Length: 342aa    MW: 36267.3 Da    PI: 8.7455
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03472-augustus-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.63.1e-3977137262
                                         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                                                    +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  maker-scaffold03472-augustus-gene-0.14-mRNA-1  77 PEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 137
                                                    67899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3461130IPR003851Zinc finger, Dof-type
PfamPF027011.3E-3280135IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.54481135IPR003851Zinc finger, Dof-type
PROSITE patternPS01361083119IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVFSSIPVYL DPPNWHQQPN HIHQPTGGGS ENTQLPPPQP LPTIGSGSGG GGGGGGSSSI  60
RPGSMTDRAR LAKIPQPEAA LKCPRCESTN TKFCYFNNYS LTQPRHFCKT CRRYWTRGGA  120
LRNVPVGGGC RRNKRSKSNR SKSPITTGHQ AGSSSTSTVS SNCCNNNDML NHMPPPPPPQ  180
LPFLPSLHHL SDYGSGDIGL NFGGFQHPVA AAGGGSGGGD VEFQIGNSSS GGGLSTGLSE  240
QWRMQQVQQF PFLTNLEPPI GLFQFDGENV QPPSYVGIAG QLRSKPMDSG VSQIASVKME  300
ESHGLNLSRN PLGTSGNDQY WAGSNAWTDL SGFTSSSTSH ML
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14556SGSGGGGGGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023926950.10.0dof zinc finger protein DOF3.6-like isoform X1
TrEMBLA5BZE71e-146A5BZE7_VITVI; Uncharacterized protein
STRINGAquca_003_00022.11e-135(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.12e-47DNA binding with one finger 2.4