PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold03404-augustus-gene-0.26-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ARR-B | ||||||||
Protein Properties | Length: 681aa MW: 74507.5 Da PI: 6.0166 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.3 | 8.2e-29 | 213 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl maker-scaffold03404-augustus-gene-0.26-mRNA-1 213 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266 79*******************.********************************8 PP | |||||||
2 | Response_reg | 73 | 1.2e-24 | 35 | 143 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlell 62 vl+vdD+p+ + +l+++l+ y ev+ + +e al +l+e++ +D+++ D+ mp+mdG++ll maker-scaffold03404-augustus-gene-0.26-mRNA-1 35 VLVVDDDPTCLVILEKMLRTCLY-EVTKCNRAEVALSMLRENKngFDIVISDVHMPDMDGFKLL 97 89*********************.***************999999******************* PP HHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 63 keireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 ++i e +lp+i+++a + ++ + + + Ga d+l Kp+ +e+l + maker-scaffold03404-augustus-gene-0.26-mRNA-1 98 EHIGLEM-DLPVIMMSADDGKQVVMKGVTHGACDYLIKPVRIEALKN 143 ***6654.8**********************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.6E-182 | 15 | 670 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 9.3E-42 | 32 | 182 | No hit | No description |
SuperFamily | SSF52172 | 1.85E-34 | 32 | 156 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 3.2E-29 | 33 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.151 | 34 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.2E-22 | 35 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.93E-26 | 36 | 148 | No hit | No description |
PROSITE profile | PS51294 | 11.048 | 210 | 269 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.58E-20 | 210 | 270 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-30 | 212 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.8E-25 | 213 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.8E-8 | 215 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MNQSNCKGSM STASSSTNWK ANDVVPDQFP AGLRVLVVDD DPTCLVILEK MLRTCLYEVT 60 KCNRAEVALS MLRENKNGFD IVISDVHMPD MDGFKLLEHI GLEMDLPVIM MSADDGKQVV 120 MKGVTHGACD YLIKPVRIEA LKNIWQHVVR KKKNEWKDLE QSGSVEEGDR QQKLSEDVDY 180 SSSANEGNWK NSKKRKDEEE ETEERDDTST LKKPRVVWSV ELHQQFVAAV NQLGIDKAVP 240 KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSQHQGM NNSFMSPQDA TFGAMSSLNG 300 LDLQTLSVTG QLPAQSLATL QAAGLGRSTT KSGIPMPLVD QRNLFSFENP KLRFGEGQQQ 360 QMSSNKPMNL LHGIPTTMEP KQLASLHQSA QSIGSMNMQV NTHGGQGSSL LMQMAQPQSR 420 GQILNESTSS HGPRLPSSIG QPTMTNGIAG GVIGRNGIGD NSRGTGYNQV PPSSSMLSFP 480 MNHTTELAGN SFPLGSSPGI SNVTSKGPFQ EEGNSEMKGS AGFISSYDIF NDLNQHQHKS 540 HDWELQNVGL HFDASQNANP IQGNLDVSPS VLVHQGYSSS QRSGQNRNAS AVGRAMFSGV 600 ECVEQGNMQN FSPHLNNLLV DNSIRVKAET IPDANSQTTL FTEHFGQDDL MSALLKQQQG 660 GIGTAETDFD LDGYSMDNIP V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-22 | 212 | 272 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023916952.1 | 0.0 | two-component response regulator ARR2-like isoform X1 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A2N9EZG9 | 0.0 | A0A2N9EZG9_FAGSY; Two-component response regulator | ||||
STRING | EOY06639 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3958 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |