PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold03375-augustus-gene-0.12-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 36358.8 Da PI: 6.9077 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++v+ +G g+W++ ++ g+ R++k+c++rw +yl maker-scaffold03375-augustus-gene-0.12-mRNA-1 14 RGLWSPEEDEKLINYVTTYGHGCWSSLPKLAGLQRCGKSCRLRWVNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.3 | 8.4e-14 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l++++ lG++ W+ Ia+ ++ gRt++++k++w+ maker-scaffold03375-augustus-gene-0.12-mRNA-1 67 RGSFSPQEAALIIELQSILGNK-WAQIAKQLP-GRTDNEVKNFWN 109 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-26 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.933 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.92E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.958 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-12 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 321 aa Download sequence Send to blast |
MRNHSCCNKQ KVKRGLWSPE EDEKLINYVT TYGHGCWSSL PKLAGLQRCG KSCRLRWVNY 60 LKPDLKRGSF SPQEAALIIE LQSILGNKWA QIAKQLPGRT DNEVKNFWNS SIKKKLISHD 120 VHAITNSTDM HYNGNSEERF FSLNANPNWI LSSQQDQLYL PTPTPTLHGF DHGDLKLDQT 180 NYGASLVQFP PPPPMAPPSN SSFYDPLWSL GYQPHEQFDP NQELQNFSTS GATQHYIGDK 240 LIGPSITAPH YDEDPLSSMI PKPCENISGN CRGMPYLCAS QDLDPLASLP YFPASFNYQH 300 DPHVPNNHME YMDVSSCHHR T |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023914121.1 | 0.0 | transcription factor MYB26-like | ||||
Swissprot | Q9SPG3 | 3e-70 | MYB26_ARATH; Transcription factor MYB26 | ||||
TrEMBL | A0A2N9I8M2 | 1e-166 | A0A2N9I8M2_FAGSY; Uncharacterized protein | ||||
STRING | EOY27141 | 1e-125 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3014 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13890.2 | 5e-76 | myb domain protein 26 |
Publications ? help Back to Top | |||
---|---|---|---|
|