PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03374-snap-gene-0.24-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MIKC_MADS
Protein Properties Length: 156aa    MW: 17948.1 Da    PI: 8.8216
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03374-snap-gene-0.24-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.81.8e-25958150
                                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                               krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye +
  maker-scaffold03374-snap-gene-0.24-mRNA-1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58
                                               79*********************************************965 PP
2K-box49.51.9e-17881561583
                                      K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                                                   ++e++ Lk+e+e Lq+ +R + G ++++++l eL  Le++Le  + +iRs+K+++++e+i+ l++
  maker-scaffold03374-snap-gene-0.24-mRNA-1  88 LDAKEEIKLLKQEVEILQKGLRYMFGGGVGTMTLDELDVLEKHLEIWICNIRSTKMNIMYEEIQLLRN 155
                                                56789***********************************************************9998 PP

                                      K-box  83 k 83 
                                                k
  maker-scaffold03374-snap-gene-0.24-mRNA-1 156 K 156
                                                7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.19E-27174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.801161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-35160IPR002100Transcription factor, MADS-box
CDDcd002654.48E-39278No hitNo description
PRINTSPR004041.7E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.47587156IPR002487Transcription factor, K-box
PfamPF014862.6E-1690156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MARGKVQLKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK  60
GTMQGLIERY MESNRGAQPE PDIETQPLDA KEEIKLLKQE VEILQKGLRY MFGGGVGTMT  120
LDELDVLEKH LEIWICNIRS TKMNIMYEEI QLLRNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-17192192MEF2C
5f28_B4e-17192192MEF2C
5f28_C4e-17192192MEF2C
5f28_D4e-17192192MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0991421e-83BT099142.1 Soybean clone JCVI-FLGm-16J2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023905937.11e-111agamous-like MADS-box protein AGL12
RefseqXP_023914605.11e-111agamous-like MADS-box protein AGL12
SwissprotQ2QW552e-65MAD33_ORYSJ; MADS-box transcription factor 33
TrEMBLA0A2I4GAQ85e-94A0A2I4GAQ8_JUGRE; agamous-like MADS-box protein AGL12
STRINGXP_006478219.13e-93(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-66AGAMOUS-like 12