PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold03238-snap-gene-0.13-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | SBP | ||||||||
Protein Properties | Length: 324aa MW: 35615.5 Da PI: 9.3767 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 97.6 | 1.1e-30 | 174 | 244 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLak 68 +CqvegC+ dl++ k+yhrrh++Ce hsk+p+v+v+g+e+r fhelsefD++krsCrrrL++ maker-scaffold03238-snap-gene-0.13-mRNA-1 174 RCQVEGCNIDLKSSKDYHRRHRICESHSKSPKVIVAGMERR-------FHELSEFDDKKRSCRRRLSD 234 6**************************************96.......7******************* PP ------S--- CS SBP 69 hnerrrkkqa 78 hn+rrr++q+ maker-scaffold03238-snap-gene-0.13-mRNA-1 235 HNARRRRPQP 244 *******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.5E-25 | 168 | 229 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 25.324 | 172 | 242 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.16E-30 | 173 | 247 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-22 | 175 | 241 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MMDWNSKATS EWDWEKLAGF SSKTIDIPEL VQPSNHELEG GVDNTSVYSS GGGGGFSGSD 60 LGHGSSSRSS ISASADSSSK EGIKRSGTVD DFPKDFTEKN EWTRADNTGI FPSFGASISS 120 GEPIIGLKLG KRTYFEDLCV ANTTKTLPTP VTPTSPAVPG KRSRASYQST QTPRCQVEGC 180 NIDLKSSKDY HRRHRICESH SKSPKVIVAG MERRFHELSE FDDKKRSCRR RLSDHNARRR 240 RPQPEAIQFH SPGLSSSIYG DGRQQMNLLL NRVPLSAANP TWQSACNYNK VTPTGHSLTR 300 PTKTGGIDRQ LKLLTDTPEY TSSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-20 | 175 | 241 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 240 | KKRSCRRRLSDHNARRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023874058.1 | 0.0 | LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A2I6SET7 | 1e-167 | A0A2I6SET7_9ROSI; SBP-box transcription factor | ||||
STRING | VIT_11s0065g00170.t01 | 1e-117 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4630 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 9e-50 | squamosa promoter binding protein-like 2 |