PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03233-augustus-gene-0.21-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HB-other
Protein Properties Length: 503aa    MW: 56013.2 Da    PI: 9.0379
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03233-augustus-gene-0.21-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox246.7e-081374655
                                                   S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
                                       Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                                                   +ft++++ e+e+  ++  n  ps++    LA+k            ++ +qV +WFqNrR+  
  maker-scaffold03233-augustus-gene-0.21-mRNA-1 13 RFTQNEVAEMEAILQQhnNTMPSRDVLVSLADKFsespdrkgkiTVQMKQVWNWFQNRRYAI 74
                                                   69*************766999*********************99999************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.46E-11476IPR009057Homeodomain-like
SMARTSM003892.4E-4781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-81379IPR009057Homeodomain-like
PfamPF000462.3E-51374IPR001356Homeobox domain
CDDcd000861.17E-51375No hitNo description
PROSITE profilePS5007110.1871377IPR001356Homeobox domain
PfamPF167196.1E-34245385IPR032001SAWADEE domain
CDDcd000240.00786270305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTQNEVA EMEAILQQHN NTMPSRDVLV SLADKFSESP DRKGKITVQM  60
KQVWNWFQNR RYAIRAKLSK APGKLNVSPM PRDDSTPVRN VPQSIAAPIP APSVCWMVQL  120
SKARSLVRII HNLAFSAAFY AIWSKGVDIV PYWLVWLPFS LPLLLRHAMA EKWKKKTTQT  180
PESGKSYQYQ CPARVGHRYI AKNGVFVQPR LFPDLIRVVL TAGFFVLYVV LVPSAGRGAP  240
ENSVMEFEAK SGRDGAWLVF LVISCIGILD VYDVTTFLSH RYLETGDPEV LVRFAGFGPE  300
EDEWINIRKH VRPRSLPCES SECVAVLPGD LILCFQEGKE QALYFDAHVL DAQRRRHDVR  360
GCRCRFLVRY AHDQSEEIVP LRKVCRRPES DHRLQQLHAV NEAASIDQQK TSFDPSGVSG  420
LRVATPAETL QQQRYADAMV VSPGPALHAN VSVATHTVIP ESKQAETSNT NIAENANAPT  480
GAALVSNTAL IPTLGGSETR PEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A8e-442453894134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B8e-442453894134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A8e-442453894134SHH1 SAWADEE
4iur_B8e-442453894134SHH1 SAWADEE
4iut_A8e-442453894134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B8e-442453894134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A8e-442453894134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B8e-442453894134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A8e-442453894134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B8e-442453894134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894279.11e-177protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ72e-85SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2N9HEU61e-137A0A2N9HEU6_FAGSY; Uncharacterized protein
STRINGXP_008226439.11e-116(Prunus mume)
STRINGEMJ126591e-116(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-74sequence-specific DNA binding transcription factors;sequence-specific DNA binding