PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold03134-snap-gene-0.16-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | Dof | ||||||||
Protein Properties | Length: 224aa MW: 24950.8 Da PI: 8.9144 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 86.4 | 2.7e-27 | 36 | 80 | 2 | 46 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGal 46 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+G l maker-scaffold03134-snap-gene-0.16-mRNA-1 36 PQEHLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGQDL 80 68999************************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-18 | 35 | 80 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-23 | 38 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 21.25 | 40 | 94 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDGTAQWPKG QGVGLVKPLE GVAPSTRPML ERRARPQEHL NCPRCNSTNT KFCYYNNYSL 60 TQPRYFCKTC RRYWTEGQDL NLGFPAFQKY HDVSQYVQVP KIENNNSNHH NSGSASSTHL 120 SALELLRTGM ASRGLNTFIP PSMPDSTTLY SSSGFPFHEF KPTHGFSIDG LGSRYGAQEN 180 GGKLLFPFEE LKQISSTNQQ VEQNKGQGGP SGYWSSMLNG GGPW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM478502 | 2e-35 | AM478502.2 Vitis vinifera contig VV78X197834.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023870674.1 | 1e-145 | dof zinc finger protein DOF2.5-like | ||||
Swissprot | Q43385 | 7e-46 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A2I4EG13 | 6e-96 | A0A2I4EG13_JUGRE; dof zinc finger protein DOF2.5-like | ||||
STRING | EOX95655 | 4e-87 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 2e-47 | Dof family protein |