PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03016-augustus-gene-0.17-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 312aa    MW: 35381 Da    PI: 7.6719
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03016-augustus-gene-0.17-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.3e-141476148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...............TTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...............kgRtlkqcksrwqkyl 48
                                                   rg W++eEde+l  +++ +G g W++++++ g               ++R++k+c++rw +yl
  maker-scaffold03016-augustus-gene-0.17-mRNA-1 14 RGLWSPEEDEKLFTYITTYGHGKWSSVPKYAGkycfnslslsititcLHRCGKSCRLRWINYL 76
                                                   788**********************************************************97 PP
2Myb_DNA-binding506.9e-1682136146
                                                    TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqk 46 
                                                    rg++T eE ++++d+++ lG++          +W+ Ia++++ gRt++++k++w++
  maker-scaffold03016-augustus-gene-0.17-mRNA-1  82 RGSFTSEEKQIIIDVHRILGNNkfqenfvwvyRWAQIAKHLP-GRTDNEVKNFWNS 136
                                                    89****************************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-23679IPR009057Homeodomain-like
PROSITE profilePS5129420.861980IPR017930Myb domain
SuperFamilySSF466898.41E-2310134IPR009057Homeodomain-like
SMARTSM007171.1E-111378IPR001005SANT/Myb domain
PfamPF002492.2E-121476IPR001005SANT/Myb domain
CDDcd001673.20E-91776No hitNo description
Gene3DG3DSA:1.10.10.605.0E-2380143IPR009057Homeodomain-like
SMARTSM007175.7E-1181140IPR001005SANT/Myb domain
PROSITE profilePS5129415.07481142IPR017930Myb domain
PfamPF002492.4E-1382136IPR001005SANT/Myb domain
CDDcd001674.67E-1084135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDGHRCCTKM NIKRGLWSPE EDEKLFTYIT TYGHGKWSSV PKYAGKYCFN SLSLSITITC  60
LHRCGKSCRL RWINYLRPDL KRGSFTSEEK QIIIDVHRIL GNNKFQENFV WVYRWAQIAK  120
HLPGRTDNEV KNFWNSCIKK KLISQGLDPS IHNLVPSHQR AYNEVACKCN VPPNDELSNS  180
VFTLNSQITN AYTLEMGTPI FTVPDNQPPL LQNPNPVWNQ SLTDFTSFPR VSSIESTPNI  240
SSSSSSSSSL VNPSGFGLLN HENCVWGDST FAPFEAPILE GERPMRQEVL QEGEKISEMG  300
TNMGYSEHGC FV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26111424108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4656846e-32AM465684.2 Vitis vinifera contig VV78X155772.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899099.11e-139transcription factor MYB41-like
TrEMBLA0A2N9ECE11e-138A0A2N9ECE1_FAGSY; Uncharacterized protein
STRINGcassava4.1_025617m6e-94(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.14e-76myb domain protein 67