PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold03016-augustus-gene-0.16-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 39004.6 Da PI: 4.5551 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.4 | 2.2e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFs 62 lppGfrFhPtdeelv +yL++k++g ++el e+i+evd+yk+ePwdLp k + +++ ewyf+s maker-scaffold03016-augustus-gene-0.16-mRNA-1 6 LPPGFRFHPTDEELVAYYLHRKINGGTIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDMEWYFYS 68 79****************************.99**************95345556888****** PP NAM 63 krdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126 +rd+ky++g+r+nrat++gyWkatgkd++v+s +++ vg+kktLv+y+grap+g +t+Wvmhey maker-scaffold03016-augustus-gene-0.16-mRNA-1 69 PRDRKYPNGSRTNRATRAGYWKATGKDRPVHS-HKHPVGMKKTLVYYRGRAPHGIRTNWVMHEY 131 ********************************.999**************************** PP NAM 127 rl 128 rl maker-scaffold03016-augustus-gene-0.16-mRNA-1 132 RL 133 98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-64 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.287 | 6 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MAPMSLPPGF RFHPTDEELV AYYLHRKING GTIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRPVHS HKHPVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLIDSMCSS SASSSLKDSY ALCRIFKKTI QIPKAKEKEQ TENLENGNPV 180 SALDEQLLGD DTSGLETFQG REAEDENFIQ DYSKFPSDTS SSDLTQGTPA ETGIADDLQA 240 PFASDEANSA ANLYSLGVDY PSNLIQDMQI QSYTSLDYQL PYPPLELEDF PQINLTETKP 300 VKPEIIDEYM SYDKIRDCMN GTLEEIFSLC SSLDNPVALS LQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-58 | 1 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-58 | 1 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-58 | 1 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-58 | 1 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-58 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-58 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-58 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-58 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-58 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-58 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-58 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-58 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-58 | 1 | 158 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-58 | 1 | 158 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00205 | DAP | Transfer from AT1G54330 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023895289.1 | 0.0 | NAC domain-containing protein 86-like | ||||
Refseq | XP_023895294.1 | 0.0 | NAC domain-containing protein 86-like | ||||
Swissprot | Q9FFI5 | 6e-88 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A0M4G3Q6 | 0.0 | A0A0M4G3Q6_MANES; NAC transcription factors 56 | ||||
STRING | cassava4.1_024467m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10508 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 1e-108 | NAC domain containing protein 20 |
Publications ? help Back to Top | |||
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