PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02930-augustus-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 343aa    MW: 38527.5 Da    PI: 7.1633
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02930-augustus-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-172471148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   rg+WT +Ed  l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  maker-scaffold02930-augustus-gene-0.12-mRNA-1 24 RGPWTVDEDFTLINYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 71
                                                   89********************************************97 PP
2Myb_DNA-binding491.4e-1577120146
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                    rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  maker-scaffold02930-augustus-gene-0.12-mRNA-1  77 RGNITLQEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120
                                                    7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9651971IPR017930Myb domain
SuperFamilySSF466896.36E-3021118IPR009057Homeodomain-like
SMARTSM007173.2E-142373IPR001005SANT/Myb domain
PfamPF002497.9E-162471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-212578IPR009057Homeodomain-like
CDDcd001672.03E-112671No hitNo description
PROSITE profilePS5129422.40972126IPR017930Myb domain
SMARTSM007175.0E-1476124IPR001005SANT/Myb domain
PfamPF002492.1E-1477120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2279125IPR009057Homeodomain-like
CDDcd001671.26E-797120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDVKGRGRSM SSTIQIDEDM DLRRGPWTVD EDFTLINYIA NHGEGRWNSL ARCAGLKRTG  60
KSCRLRWLNY LRPDVRRGNI TLQEQLLILE LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT  120
RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAATVA PANTSIAATT TTTATTGACS  180
IGSSTSTTTT TTNNNSNNYH INNNNLDVQT GQMLLPHGVA IGHDFRGAQV TPSYNTPENS  240
STAGSSDSFG AQVSPVSDLT DYYNIPVNNN PSLECFQASQ VGYQDSLTSP SGYFNNGLDF  300
QAMEQSNQWL DGGDTSDNLW NVDDMWFLQQ QLNNNSSNNN NNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-242111824120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor contributing to the regulation of stamen maturation and male fertility in response to jasmonate signaling. Required for correct timing of anther dehiscence. Acts as a negative regulator of abscisic acid-induced cell death. Not involved in the regulation of BOI. Regulated by MYB21 and at a lower level by MYB24. Negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23952703}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate and pathogen infection. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924576.10.0transcription factor MYB108
SwissprotQ9LDE13e-95MY108_ARATH; Transcription factor MYB108
TrEMBLA0A2N9E6H30.0A0A2N9E6H3_FAGSY; Uncharacterized protein
STRINGPOPTR_0010s15970.11e-159(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.12e-88myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng HQ, et al.
    The cotton MYB108 forms a positive feedback regulation loop with CML11 and participates in the defense response against Verticillium dahliae infection.
    J. Exp. Bot., 2016. 67(6): p. 1935-50
    [PMID:26873979]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Chou ML, et al.
    The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana.
    Int J Mol Sci, 2018.
    [PMID:29937503]