PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02908-augustus-gene-0.24-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 315aa    MW: 35615.9 Da    PI: 5.6579
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02908-augustus-gene-0.24-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.4e-152370148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
  maker-scaffold02908-augustus-gene-0.24-mRNA-1 23 KGLWSPEEDEKLMRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 70
                                                   678*******************************************97 PP
2Myb_DNA-binding53.36.4e-1776120147
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                    rg+++++E+el++++++ lG++ W+ Ia++++ gRt++++k++w++ 
  maker-scaffold02908-augustus-gene-0.24-mRNA-1  76 RGAFSPQEEELIIHLHAILGNR-WSQIAARLP-GRTDNEIKNFWNST 120
                                                    89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1731870IPR017930Myb domain
SuperFamilySSF466891.25E-2821117IPR009057Homeodomain-like
SMARTSM007172.1E-112272IPR001005SANT/Myb domain
PfamPF002495.6E-142370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-242477IPR009057Homeodomain-like
CDDcd001675.73E-102670No hitNo description
PROSITE profilePS5129425.06171125IPR017930Myb domain
SMARTSM007171.1E-1675123IPR001005SANT/Myb domain
PfamPF002491.4E-1576120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2678124IPR009057Homeodomain-like
CDDcd001673.15E-1278121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MRKPDQMGKE RMNNTNNKSK LRKGLWSPEE DEKLMRYMLT NGQGCWSDIA RNAGLQRCGK  60
SCRLRWINYL RPDLKRGAFS PQEEELIIHL HAILGNRWSQ IAARLPGRTD NEIKNFWNST  120
LKKRFKNNTF STSTNDSDSS EPRDVIGVTP LHEHDIMNMC MDTFSSSSNS MQTLVTAGSH  180
LDPFSMLDNC YDMTGAAGLF NVPTSLPPQV GKGDAFYGDF GILGPNNMGL ERDLSLPPLE  240
SRSIEENNAM VDMKSNNNHL NNNGCFNNTS ESFKVENMFG FGNHGQGENL KMGEWDFEGL  300
MQDLSSFPYL DFPVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27211255108B-MYB
1h8a_C7e-272112525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927395.10.0transcription factor MYB83
SwissprotQ9C6U13e-82MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A2N9FKZ20.0A0A2N9FKZ2_FAGSY; Uncharacterized protein
STRINGEOX966931e-150(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.11e-82myb domain protein 83
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]