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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
maker-scaffold02872-augustus-gene-0.27-mRNA-1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
BBR-BPC |
| Protein Properties |
Length: 315aa MW: 35384.1 Da PI: 10.1314 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold02872-augustus-gene-0.27-mRNA-1 | genome | THGP | View Nucleic Acid |
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| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 368 | 1.8e-112 | 1 | 315 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlal 46
mdd ++e r+k yy+ ++ ++l +++++ms+iaerda+irern+al
maker-scaffold02872-augustus-gene-0.27-mRNA-1 1 MDDGRQHEngRHKLdYYRgphspwnmmsqhqvKEpNALV--MNKKIMSIIAERDAAIRERNAAL 62
666665555888887888999999999876653335666..99********************* PP
GAGA_bind 47 sekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksids 110
sek++a+a+rd a+ qrd+ala+r+ al+erdn+l+al++++ns + p g ++ +g+k +++
maker-scaffold02872-augustus-gene-0.27-mRNA-1 63 SEKNEALAARDDALRQRDEALAQRDTALMERDNALAALQVRDNS--INFPLGGGIQRGSKRMHH 124
*****************************************998..5678899999*******8 PP
GAGA_bind 111 lqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrak...kpkekkakkkkkks 171
+ + ++++ ++ +++ ++++a+pi+ a+ea ++++ k+++++k ++ +k +k+kk +
maker-scaffold02872-augustus-gene-0.27-mRNA-1 125 PSN-HMVNMAEAPYSTKDAQITDAFPITVIASEAVKSHQAKRTKENKgvsSKTSKSPRKPKKVG 187
887.779*******************99888887777666655554411044444455888888 PP
GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
e+ +++ ++++ + ++e++s+dl+ln v++Des++PvPvC+CtG++rqCYkWGnGGWqS+CC
maker-scaffold02872-augustus-gene-0.27-mRNA-1 188 EDLNRQAASDGI--KYRSEWDSQDLGLNLVTFDESSMPVPVCTCTGVPRQCYKWGNGGWQSSCC 249
888888888885..69************************************************ PP
GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvt 299
tt +S+yPLP+++++r+aR++grKmS+++f++lL++LaaeG+dls p+DLkd+WA+HGtn+++t
maker-scaffold02872-augustus-gene-0.27-mRNA-1 250 TTRMSMYPLPQMPNKRHARVGGRKMSGSVFTRLLSRLAAEGHDLSLPLDLKDYWARHGTNRYIT 313
**************************************************************** PP
GAGA_bind 300 ir 301
i+
maker-scaffold02872-augustus-gene-0.27-mRNA-1 314 IK 315
*8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MDDGRQHENG RHKLDYYRGP HSPWNMMSQH QVKEPNALVM NKKIMSIIAE RDAAIRERNA 60
ALSEKNEALA ARDDALRQRD EALAQRDTAL MERDNALAAL QVRDNSINFP LGGGIQRGSK 120
RMHHPSNHMV NMAEAPYSTK DAQITDAFPI TVIASEAVKS HQAKRTKENK GVSSKTSKSP 180
RKPKKVGEDL NRQAASDGIK YRSEWDSQDL GLNLVTFDES SMPVPVCTCT GVPRQCYKWG 240
NGGWQSSCCT TRMSMYPLPQ MPNKRHARVG GRKMSGSVFT RLLSRLAAEG HDLSLPLDLK 300
DYWARHGTNR YITIK
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
