PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02806-augustus-gene-0.22-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 147aa MW: 16417 Da PI: 11.1359 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.1 | 3.5e-21 | 22 | 72 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ ++r +lg+f+taeeAa a+++a+++l+g+ maker-scaffold02806-augustus-gene-0.22-mRNA-1 22 HYRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAALAYDEAALRLRGP 72 7********.**********883....5**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.13E-31 | 21 | 78 | No hit | No description |
PROSITE profile | PS51032 | 22.879 | 22 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-36 | 22 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 22 | 79 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-31 | 22 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-14 | 22 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MSMNGSVHAS ATTRPPPKQQ AHYRGVRKRP WGRFAAEIRD PWKKTRKWLG TFDTAEEAAL 60 AYDEAALRLR GPKAKTNFGF ILPPPPSPAP PPPPPPPPPP VRSEYRGYKM ENLAVMTTPQ 120 SHTQTTLSPS PKKRPFLFDL NLPAPLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-23 | 22 | 78 | 5 | 62 | ATERF1 |
3gcc_A | 3e-23 | 22 | 78 | 5 | 62 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023924196.1 | 1e-67 | ethylene-responsive transcription factor ERF112-like | ||||
TrEMBL | A0A2N9I8P6 | 3e-52 | A0A2N9I8P6_FAGSY; Uncharacterized protein | ||||
STRING | EMJ00448 | 3e-51 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 4e-22 | ERF domain protein 12 |