PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02799-augustus-gene-0.20-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 403aa MW: 45043.8 Da PI: 5.7012 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38.1 | 4.7e-12 | 54 | 134 | 32 | 128 |
NAM 32 evikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + +++vd ++++P++Lp +++f ++++ + ++g W+ +g+ +++ maker-scaffold02799-augustus-gene-0.20-mRNA-1 54 NLLTNVDFLRCDPEHLP-------PDMWFLINSEVD--------GVNEHGKWSIKGEAYKIVL- 101 45888899999999998.......233444443332........2456899************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++ ++t+ fykg+ p+ ++t+Wvmheyr+ maker-scaffold02799-augustus-gene-0.20-mRNA-1 102 DSMTTCSRTTFEFYKGQGPHKRRTSWVMHEYRI 134 9999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.932 | 25 | 157 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-17 | 48 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-6 | 58 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MQGQIQVADL FPFLLNCLTM CPPAVPSDIE SNLTAEIIKC LCKINKGDLD LPSNLLTNVD 60 FLRCDPEHLP PDMWFLINSE VDGVNEHGKW SIKGEAYKIV LDSMTTCSRT TFEFYKGQGP 120 HKRRTSWVMH EYRILQRGQF EGSNMKETNS LCRVLRDGKQ SQNHEKQLKL GSTNTASENH 180 IHTTHSVVPN ADNSIGQSST SQPRVCQPQL PGLHIWASED DDIVMLGLEH QHQNLHEIDH 240 PPEGDFLEMM DLLDEPASPS SSESSCVTMS SDECFDSLAL LQELEAENNQ NDAGCKFNVS 300 APVKPNEVKV FPASTGSLDR DREKMLTPSA ILKTDSSTPE SAVRCQVNRI QRPNFGNEGP 360 SSNSQNVTPP FSGHNRLAAD KEKMAHVGKK KKCWKYLLCF MSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023913941.1 | 1e-177 | uncharacterized protein LOC112025493 isoform X1 | ||||
TrEMBL | A0A2N9H5G7 | 1e-123 | A0A2N9H5G7_FAGSY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10588 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 3e-14 | NAC domain containing protein 28 |