PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02755-augustus-gene-0.17-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

M-type_MADS

Protein Properties

Length: 385aa MW: 43740.4 Da PI: 7.3245

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02755-augustus-gene-0.17-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.2	6.8e-21	46	90	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR++gi+KKA+ELS+LCd+++ +++fs++gk maker-scaffold02755-augustus-gene-0.17-mRNA-1 46 KRLENTNGRQATYAKRKHGIMKKANELSILCDIDIVLLMFSPSGK 90 689****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.885	38	90	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.0E-28	38	97	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.08E-24	39	119	No hit	No description
SuperFamily	SSF55455	6.02E-24	39	132	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-16	40	60	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-18	48	91	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-16	60	75	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-16	75	96	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MIEFVWLVYG FSDDPDSHAC CYDRFFRSPG RVSLAYIMGR VKLKIKRLEN TNGRQATYAK 60 RKHGIMKKAN ELSILCDIDI VLLMFSPSGK PSICRGMRSS IEEVIAKFAQ LTPQERAKRK 120 LESLEALKKT FKKLDHDVNI QEFLGTSTQT IEDLTNQARS LETQLAEINK RLSYWTTPDK 180 INSVEHLGQM EDSLRESLNQ IRTHKENLQK QQLLSLECSS QFQNGMHIPF RIGAEQQLQP 240 LSWLPNNDSR QIMFPEDPNL LPHRDVECSA SSSLGSYSGY FGTGKNSEIP NSGQEHGLLS 300 QLTRNAPLRL QLGGQYPYLP YNVNLLNDTK FQPAAQMNQQ EDPLEYHVSG NFGTSRPGYE 360 TTQHGWASTS GSSAVNMFDE HLYPQ

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MIEFVWLVYG FSDDPDSHAC CYDRFFRSPG RVSLAYIMGR VKLKIKRLEN TNGRQATYAK  60
RKHGIMKKAN ELSILCDIDI VLLMFSPSGK PSICRGMRSS IEEVIAKFAQ LTPQERAKRK  120
LESLEALKKT FKKLDHDVNI QEFLGTSTQT IEDLTNQARS LETQLAEINK RLSYWTTPDK  180
INSVEHLGQM EDSLRESLNQ IRTHKENLQK QQLLSLECSS QFQNGMHIPF RIGAEQQLQP  240
LSWLPNNDSR QIMFPEDPNL LPHRDVECSA SSSLGSYSGY FGTGKNSEIP NSGQEHGLLS  300
QLTRNAPLRL QLGGQYPYLP YNVNLLNDTK FQPAAQMNQQ EDPLEYHVSG NFGTSRPGYE  360
TTQHGWASTS GSSAVNMFDE HLYPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	3e-13	38	129	1	90	MEF2 CHIMERA
6byy_B	3e-13	38	129	1	90	MEF2 CHIMERA
6byy_C	3e-13	38	129	1	90	MEF2 CHIMERA
6byy_D	3e-13	38	129	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023894843.1	0.0	agamous-like MADS-box protein AGL30 isoform X2
Swissprot	Q1PFA4	1e-119	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A2I4GMX0	0.0	A0A2I4GMX0_JUGRE; agamous-like MADS-box protein AGL30 isoform X2
STRING	POPTR_0008s08780.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-107	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]