PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02713-snap-gene-0.26-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CO-like
Protein Properties Length: 423aa    MW: 46716.2 Da    PI: 5.0733
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02713-snap-gene-0.26-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.74.2e-074685439
                                   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedCllee..Hkg..Htv 39
                                                 C+++++++++  C d+++ lC+ C  ++   ++  H++
  maker-scaffold02713-snap-gene-0.26-mRNA-1 46 LLCDKCNSQPAIVRCMDDKMSLCQGCDWNGneCSRlgHRR 85
                                               57************************98776655555655 PP
2CCT62.21.6e-21367410144
                                        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                                R++a++RY+eK+k+R F K+irY+sRKa+A++R+RvKGrFvkq 
  maker-scaffold02713-snap-gene-0.26-mRNA-1 367 RDKAKMRYNEKKKSRTFGKQIRYASRKARADTRKRVKGRFVKQG 410
                                                899***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.1E-4147IPR000315B-box-type zinc finger
PROSITE profilePS501198.834388IPR000315B-box-type zinc finger
CDDcd000210.009694788No hitNo description
PfamPF062032.0E-16367409IPR010402CCT domain
PROSITE profilePS5101714.713367409IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MEPPCDFCGV LRAVVYCKSD LARLCLHCDG CVHSANSLSR RHMRSLLCDK CNSQPAIVRC  60
MDDKMSLCQG CDWNGNECSR LGHRRQSLNC YTGCPSLTEL SRIWSSLLDS SSSSNFDSGW  120
EYLTTQPMSE NCINNCFEQK DNEGSLELVA TKPNELEPCS KFGSWTGLSS LIPTNPNYMP  180
YCRDQAPFFS EESNLPKESS NFKDLVDTDD LCEGLNMDDV SLKNGEIFGC PQGSARYQFE  240
DGGMECLSME KNLSVTESNG PIESALEASS SGQQDCVGFQ SSHVGGSASM MPVSGSPNCL  300
LLNPTHTRNI NLGFPTGQVH SSISLSLSNI TGESSAADYQ DCGLSPVFLT VESPWESNLE  360
ASCPQARDKA KMRYNEKKKS RTFGKQIRYA SRKARADTRK RVKGRFVKQG EVYDYDPLTT  420
SDF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023883775.10.0putative zinc finger protein CONSTANS-LIKE 11 isoform X1
TrEMBLA0A2I4GR930.0A0A2I4GR93_JUGRE; zinc finger protein CONSTANS-LIKE 12-like
STRINGXP_006447487.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-104B-box type zinc finger protein with CCT domain