PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02707-augustus-gene-0.23-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 682aa    MW: 75250.8 Da    PI: 9.9414
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02707-augustus-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-072958332
                                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
                                Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg 32
                                                   +W t+E++ll+ avk++G ++W+++a ++ 
  maker-scaffold02707-augustus-gene-0.23-mRNA-1 29 SWGTWEELLLAFAVKRHGFKDWDSVATELS 58
                                                   7**************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002496.4E-62958IPR001005SANT/Myb domain
SMARTSM002973.5E-17308413IPR001487Bromodomain
SuperFamilySSF473709.03E-18309415IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.7E-15311427IPR001487Bromodomain
CDDcd043691.48E-14315408No hitNo description
PROSITE profilePS5001412.278323394IPR001487Bromodomain
PfamPF004391.3E-10326397IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MKETETESQS ETKTSSSNCI TTTTTTSSSW GTWEELLLAF AVKRHGFKDW DSVATELSLH  60
SLKPSSSSSP PLLPLHCMNK FRDLKRRFSL LTNNQQNDVV ADASENENEN EKENEENDVV  120
FYDAWLDELR KRRVAELKRD LQRYDLNIVL LEKKVKKLEE ERERGEEKPD LERDGSGNGE  180
PEEDEVAPVT GENSDKDNRS FNESNSTEGE KSGEGAKSEG EPVLKTGSDG PDPGREDVES  240
EEDVAAAQSE SERKGGGGGG DSSELRTDSA ARGSSEVQSS SASLTGKRMR RRRKEVSGGA  300
ESPETVELAV KSEPLVEILE IIRACENSSL FERRLESQET DNYKNMVRQH LDLETIQSKL  360
QKGTYSSSTL TFYRDLLLLF NNATIFFPKS SIELTTAHQL RHLVLNKIKN KIPKPNPKED  420
SPPPSPSPSP VTITMPAKTP TPNAIPEPKP ELERTDSLLA KQKSSAPIIV CRKRSSMSAK  480
PSSAVFGQKD KQVSDEKKSV IDIKPPPIKP SSTNTVEDNS VIKTHSKEKP ITGARSLRRG  540
NKNLTNNVSA SSKKQSTSPG SKASSGNKVE SSKTDKKKIE ALPLEKKRSA ADFLKRIKSG  600
GGSSKEQKRK LSGKEDNSRK ERGLRQSSDK KLVKEESSPS KRSVGRPPKR AAEASPVSVK  660
RGKNSGGKEV AASNRPRKRA RR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289294RRRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876129.10.0pinin-like
TrEMBLA0A2N9I6200.0A0A2N9I620_FAGSY; Uncharacterized protein
STRINGVIT_13s0156g00340.t011e-148(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-82DNA-binding bromodomain-containing protein