PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02656-augustus-gene-0.15-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 379aa MW: 44135.4 Da PI: 6.9594 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.1 | 5.8e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfF 61 +ppGfrFhPtdeelv++yL+kk+++++++l +vik+vd+yk+ePwdL++ ++ + e++ewyfF maker-scaffold02656-augustus-gene-0.15-mRNA-1 7 VPPGFRFHPTDEELVDYYLRKKISSRRIDL-DVIKDVDLYKIEPWDLQElcRIGTeEQNEWYFF 69 69****************************.9***************954555442556***** PP NAM 62 skrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125 s++dkky+tg+r+nrat++g+Wkatg+dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mhe maker-scaffold02656-augustus-gene-0.15-mRNA-1 70 SHKDKKYPTGTRTNRATTAGFWKATGRDKAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHE 132 *********************************.8899************************** PP NAM 126 yrle 129 yrle maker-scaffold02656-augustus-gene-0.15-mRNA-1 133 YRLE 136 **85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-59 | 5 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.414 | 7 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MNTFSHVPPG FRFHPTDEEL VDYYLRKKIS SRRIDLDVIK DVDLYKIEPW DLQELCRIGT 60 EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETEEN GTPQANLERK TANHLVHFQF AFWQEEGWVV CRVFKKRIAT 180 VRKVNEQGSP CWYDDQVSFM PDLDSPKHNS QSNLAYQLPY CKKELDLVPY HAPHDHFLQL 240 PLLESPKLLQ SAPTISSNSL APYVIDINHA TTLQSSSLSR EEQIQHQPHE QNFYVAYANN 300 NCNEQAVDQV TDWRVLDKFV ASQLSHEDAS KQISYSTGTN NIYHTSNSTN VFVRRMDKQE 360 MVPESVSMSS SSGQIELWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-48 | 6 | 135 | 14 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00136 | DAP | Transfer from AT1G12260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023895276.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-141 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A2N9HYR3 | 0.0 | A0A2N9HYR3_FAGSY; Uncharacterized protein | ||||
STRING | VIT_16s0022g00690.t01 | 0.0 | (Vitis vinifera) | ||||
STRING | EOY22909 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1269 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-119 | NAC 007 |
Publications ? help Back to Top | |||
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