PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02642-snap-gene-0.29-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 355aa    MW: 39356.3 Da    PI: 5.8469
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02642-snap-gene-0.29-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-162570147
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                               +g+W+ eEd +l ++v ++G ++W++Iar++  gR++k+c++rw + 
  maker-scaffold02642-snap-gene-0.29-mRNA-1 25 KGPWSLEEDAILSRLVSKFGARNWTLIARRIA-GRSGKSCRLRWCNQ 70
                                               79******************************.***********985 PP
2Myb_DNA-binding58.31.7e-1877121147
                                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                r+++T eEd+ +v a++ +G++ W++Iar ++ gRt++ +k++w++ 
  maker-scaffold02642-snap-gene-0.29-mRNA-1  77 RKPFTDEEDQMIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 121
                                                789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.3442071IPR017930Myb domain
SuperFamilySSF466891.15E-3022118IPR009057Homeodomain-like
SMARTSM007176.6E-152473IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-252678IPR009057Homeodomain-like
CDDcd001675.65E-142769No hitNo description
PfamPF139212.8E-162887No hitNo description
PROSITE profilePS5129426.91672126IPR017930Myb domain
SMARTSM007171.8E-1776124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2479125IPR009057Homeodomain-like
CDDcd001675.34E-1379122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEREREVEEE EEEITVVVEG RDKVKGPWSL EEDAILSRLV SKFGARNWTL IARRIAGRSG  60
KSCRLRWCNQ LDPTVKRKPF TDEEDQMIVA AHAIHGNKWA AIARLLPGRT DNAIKNHWNS  120
TLKRRRMGVG KIKSESCNMV DDSLEKTKAS SEETLSCGDV NSFKSLEGRD MSSLEDMDDQ  180
NEDKVPIEGH FSHEDIDQST LFRPVARISA LAPVPMQGPL VQASKPDVDI CKLFEGVCGE  240
RLVPHNCGHG CCGTQNDRIP RSSLLGPEFV EFSESPSFPS LELAAIATDI SKLAWLKSGL  300
ENSSVRAIDD AAGGIKSHGS QVQTRHLEES RVNGHFCFDE GNSRLTGMKT NVLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-41221254107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875720.10.0LOW QUALITY PROTEIN: transcription factor MYB1-like
SwissprotQ425751e-103MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A2P5A8F51e-171A0A2P5A8F5_PARAD; MYB transcription factor
STRINGXP_010101850.11e-166(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.19e-95myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]