PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02613-augustus-gene-0.22-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CO-like
Protein Properties Length: 481aa    MW: 52260.2 Da    PI: 6.6996
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02613-augustus-gene-0.22-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.31.5e-083883342
                                       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                                    ++C+++++++++  C +++  lC++C l  H +      H+++p+
  maker-scaffold02613-augustus-gene-0.22-mRNA-1 38 SQICDNCSSEPVSVRCSTDNLVLCQECDLDAHGScsvsasHDRSPI 83
                                                   579*****************************55999999998876 PP
2CCT64.33.6e-22432476145
                                            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                                                    R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++e
  maker-scaffold02613-augustus-gene-0.22-mRNA-1 432 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASE 476
                                                    7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.5E-4340IPR000315B-box-type zinc finger
CDDcd000215.63E-4628No hitNo description
PROSITE profilePS5011910.5233683IPR000315B-box-type zinc finger
PfamPF006437.3E-63983IPR000315B-box-type zinc finger
CDDcd000213.26E-64083No hitNo description
SMARTSM003360.214183IPR000315B-box-type zinc finger
PROSITE profilePS5101714.912432474IPR010402CCT domain
PfamPF062031.9E-16432474IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MRQQIAVLYC RADSAKLCLF CDQHVHSANL LSRKHLRSQI CDNCSSEPVS VRCSTDNLVL  60
CQECDLDAHG SCSVSASHDR SPIEGFSGCP SALDLASFWG LDLDDKKANQ SAPTIQDWCG  120
GGAAQDLFMP SSAWMFNNDY NNNNSKSSAA LCYQDLIVPN DSSNGGAILG ANCGGIVTAS  180
KSCGKQRHVI YKQLVELSKR DLPCGVGDNG GLDFENGGGD DDHHGVVGSA NSGGGGVVQV  240
QQSVQQQHQT VPFTTLLTMP TTSHVDLKGT DHRIVNRDML WDCDHNAQST QIWDFNLGRL  300
RGHEEPGTLE VAYGGNDAGF MIKNFGELLK ESSLPNAKIL GDMYPMNCPV THDDMAFNNN  360
SNNPTASQGP ATSESNNLPV GRSESVSAFG KARGSSGSKD MHFVEQPFLV RVDSVETAAI  420
TKADMELLAQ NRGNAMQRYK EKKKTRRYDK HIRYESRKAR ADTRKRVKGR FVKASEAPDG  480
C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023926936.10.0zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A2N9I5B30.0A0A2N9I5B3_FAGSY; Uncharacterized protein
STRINGcassava4.1_006085m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-100B-box type zinc finger protein with CCT domain