PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02511-augustus-gene-0.12-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

SBP

Protein Properties

Length: 437aa MW: 48281 Da PI: 7.5003

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02511-augustus-gene-0.12-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.4	1.3e-40	203	280	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-ST CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrr 64 +Cqv+gC++ l +ak+yhrrhkvCe+hskap+v+v gl qrfCqqCsrfh++sefDe+krsCrr maker-scaffold02511-augustus-gene-0.12-mRNA-1 203 RCQVDGCHVALINAKDYHRRHKVCEMHSKAPKVVVLGLDQRFCQQCSRFHAVSEFDESKRSCRR 266 6************************************************************* PP TTT-------S--- CS SBP 65 rLakhnerrrkkqa 78 rLa+hnerrrk+++ maker-scaffold02511-augustus-gene-0.12-mRNA-1 267 RLAGHNERRRKSSH 280 *********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.4E-34	198	265	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.47	201	278	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.09E-38	202	283	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.0E-32	204	277	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MEIGGNMFGQ SNGNRGQNGN NNASLGWDIW ELSTSRLDWN TNSNNTFYNT TTTTAAVSAG 60 ADDTSITAGS PNTTRDDASA SHALLFSDHN DSLGLLHHHF HYQHQNHHHN QQPLYAGDGS 120 HLHPDPHLMC LKLGKRHYFE QDTTTNPLGD RHVSLPIPSS TSSSSSVGKR GKPYHSGGVV 180 TVTSSSAATS SSSCSTLPST VPRCQVDGCH VALINAKDYH RRHKVCEMHS KAPKVVVLGL 240 DQRFCQQCSR FHAVSEFDES KRSCRRRLAG HNERRRKSSH DSAANKNSTQ GGRFPYFSSS 300 PTGCALSLLS TKTDSWVSPA DLSTRSSAAL RELIAEHRAA ILARQLVFDR DWHTQHHAME 360 ELGDAQQPRS NSPIPHQYQM FPEPHSWDKF HESDTHVTLD LMQASSSAFG LLSMRGKNKD 420 DEECSDLWNS FHGAHVI

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MEIGGNMFGQ SNGNRGQNGN NNASLGWDIW ELSTSRLDWN TNSNNTFYNT TTTTAAVSAG  60
ADDTSITAGS PNTTRDDASA SHALLFSDHN DSLGLLHHHF HYQHQNHHHN QQPLYAGDGS  120
HLHPDPHLMC LKLGKRHYFE QDTTTNPLGD RHVSLPIPSS TSSSSSVGKR GKPYHSGGVV  180
TVTSSSAATS SSSCSTLPST VPRCQVDGCH VALINAKDYH RRHKVCEMHS KAPKVVVLGL  240
DQRFCQQCSR FHAVSEFDES KRSCRRRLAG HNERRRKSSH DSAANKNSTQ GGRFPYFSSS  300
PTGCALSLLS TKTDSWVSPA DLSTRSSAAL RELIAEHRAA ILARQLVFDR DWHTQHHAME  360
ELGDAQQPRS NSPIPHQYQM FPEPHSWDKF HESDTHVTLD LMQASSSAFG LLSMRGKNKD  420
DEECSDLWNS FHGAHVI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-31	195	277	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023923664.1	0.0	squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	3e-56	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A2N9FJB1	0.0	A0A2N9FJB1_FAGSY; Uncharacterized protein
STRING	EOX96362	1e-149	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9613	27	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	8e-36	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]