PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02471-augustus-gene-0.27-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | SBP | ||||||||
Protein Properties | Length: 206aa MW: 22745.1 Da PI: 8.6443 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 73.5 | 3.6e-23 | 72 | 119 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cq+e+C adl++ak+yhrrhkvCe hska+vv+v+g++qrfCqqCsr maker-scaffold02471-augustus-gene-0.27-mRNA-1 72 CCQAEKCGADLTDAKRYHRRHKVCELHSKASVVIVAGQRQRFCQQCSR 119 6**********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-24 | 66 | 119 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 18.033 | 70 | 148 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.14E-22 | 71 | 121 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.9E-17 | 73 | 119 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MEARSFEGKR TFKEKVYKDA IVEEDVDDDL DEEEGGGGEM MSFADNERKR AVAVCSGKRG 60 TSGGAGGVSP PCCQAEKCGA DLTDAKRYHR RHKVCELHSK ASVVIVAGQR QRFCQQCSRS 120 RISKPSFSIV FDSCFFSIVT WNVIPSITST TSLASKSKCS MIYQSLMKLK EAAAYAWLDT 180 MSAAERLVAS QRKLRVGKLM IIVAEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 1e-18 | 69 | 122 | 2 | 55 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023921416.1 | 2e-58 | squamosa promoter-binding protein 1-like | ||||
TrEMBL | A0A2I4H3R1 | 7e-47 | A0A2I4H3R1_JUGRE; squamosa promoter-binding-like protein 3 | ||||
STRING | XP_009340759.1 | 6e-38 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 9e-15 | squamosa promoter binding protein-like 8 |