PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02285-augustus-gene-0.24-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SBP
Protein Properties Length: 999aa    MW: 110846 Da    PI: 6.0166
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02285-augustus-gene-0.24-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.36.8e-41154231178
                                                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-ST CS
                                            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrr 64 
                                                    +Cqve+C adl++ak+yhrrhkvCe hska+++lv ++ qrfCqqCsrfh l+efDe+krsCrr
  maker-scaffold02285-augustus-gene-0.24-mRNA-1 154 VCQVEDCGADLNNAKDYHRRHKVCELHSKASKALVGNTWQRFCQQCSRFHVLQEFDEGKRSCRR 217
                                                    6*************************************************************** PP

                                                    TTT-------S--- CS
                                            SBP  65 rLakhnerrrkkqa 78 
                                                    rLa+hn+rrrk+++
  maker-scaffold02285-augustus-gene-0.24-mRNA-1 218 RLAGHNKRRRKTNP 231
                                                    ***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-32149216IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.855152229IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-38153234IPR004333Transcription factor, SBP-box
PfamPF031103.0E-29155228IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.201.8E-6303332IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.93E-7774884IPR020683Ankyrin repeat-containing domain
CDDcd002043.31E-6776884No hitNo description
Gene3DG3DSA:1.25.40.201.8E-6776885IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 999 aa     Download sequence    Send to blast
MEARFGGEAH RFYAMSAADL RAMGKRTSDW DSNDWKWDGD LFIASRLNPL PSDSVGQQFF  60
PIGSEIPVNG GSSNSSSSCS DEVSLGLEKG KRELEKRRRV IVVEDDNLND EEAGNLALKL  120
GGQGYQVTER EVGNWEGTSG KKTKLVGSTS NRAVCQVEDC GADLNNAKDY HRRHKVCELH  180
SKASKALVGN TWQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKTN PDPVVNGNTL  240
NDDQTSGYLL ISLLRILSNL HSNRSDQTTE QDVLSHLLRS LANQTAEHGG KDISGVLREP  300
SNLASLGNSE LLSALLSNGL QGPSRPFKQH QPVPVSEIPR QGLSVDDTRV GDIQNMSSKP  360
SILNSPPAYS EVRDSSAGQI KMNNFDLNDI YIDSDDGMED MERSPIPVNM GTSSLDSHQS  420
SPPQTSGNSD SASAQSPSSS SGEAQSRTDR IVFKLFGKDP NDFPHVLRAQ ILDWLSHSPT  480
DIESYIRPGC IVLTIYLHQA EAAWEELCYD LSSSLNRLLD ASDDSFWRTG WVYVRVQHQI  540
AFIYDGQVII DTSLPLRSNN YSKILSVKPV AISTTERAQF LVKGINLTRP TTRLLCALEG  600
NYLVEENTYD SMDSLNTLNE NDELRCINFS CSIPAVNGRG FIEIEDHGFS STFFPFIVAE  660
EDVCSEIRAL ESELELSETN ADLGGSGRME TKNQALGFIN EMGWLLHRSQ LKSRLGNMDL  720
NPESFHLKRF KWLMEFSMDH DWCAVVRKLL GILLDETVGA GEHSSLNLAL VEMGLLHRAV  780
RRNSRALVEL LLRYQISDQL ISENKSLVDG GKGGFLFRPD VVGPSGLTPL HIAAGKDGSE  840
NVLDALTDDP KMVGIEAWNS ARDSTGSTPE DYARLRGHYS YIHLVQKKIN KKSAAEHVVL  900
DIPSVLSDCS VNKKQNNELT STFEIKGTDL KCIRQQCKLC DRKLAYGTGS RFLVYRPVML  960
SMVAIAAVCV CVALLFKSSP EVLFVFRPFS WEALAFGSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-301542281084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19599KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023893498.10.0squamosa promoter-binding-like protein 1
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A2N9HD860.0A0A2N9HD86_FAGSY; Uncharacterized protein
STRINGXP_002515202.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]